View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18058_low_6 (Length: 516)
Name: NF18058_low_6
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_6 |
 | |
|
| [»] scaffold1366 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 31213811 - 31213310
Alignment:
| Q |
1 |
cattctaattgtgaggagggagagaaccgtgaaattaacacggtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213811 |
cattctaattgtgaggagggagagaaccgtgaaattgacacggtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaac |
31213712 |
T |
|
| Q |
101 |
ttatttggatatccattaccatccccctattgattggcattgtcttccaattagtgggttgatgcagcactgaaagcgagaagtaggcataactgaaata |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213711 |
ttatttggatttccattaccatccccctattgattggcattgtcttccaattagtgggttgatgcagcactgaaagcgagaagtaggcataactgaaata |
31213612 |
T |
|
| Q |
201 |
tgtttatactaagggatggagggagtacttgttttgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatc |
300 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213611 |
tgtttatactaa-ggacggagggagtacttgttttgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatc |
31213513 |
T |
|
| Q |
301 |
catcgataaccacaatttttgacctctaaatgcaatctggggggatgcacagcataaccttccaatttaataattctctggggaaagcacccacgttg-- |
398 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213512 |
catcgataacctcaatttttgacctctaaatgcaatctggggggatgcacagcataaccttccaatttaataattctctggggaaagcacccacgttgtc |
31213413 |
T |
|
| Q |
399 |
--cttgtgatatactccataaatgattccctagggagaaaaattagcaacatgtgttctaagtcaacagtgaccagatcgttttcaagatgcatgggagt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213412 |
cacttgtgatatactccataaatgattccctagggagaaaaattagcaacatgtgttctaagtcaacagtgaccagatcgttttcaagatgcatgggagt |
31213313 |
T |
|
| Q |
497 |
att |
499 |
Q |
| |
|
||| |
|
|
| T |
31213312 |
att |
31213310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 31248002 - 31247902
Alignment:
| Q |
235 |
tgaaccgaggaatttccaccgtacatcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgca |
334 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
31248002 |
tgaactgaggaatttccactgtacatcatttgtgggtttaaatgttccagatcctccttaaatatccaatgataaccacaattttttacctccaaatgca |
31247903 |
T |
|
| Q |
335 |
a |
335 |
Q |
| |
|
| |
|
|
| T |
31247902 |
a |
31247902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 31264087 - 31264164
Alignment:
| Q |
258 |
catcatttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaa |
335 |
Q |
| |
|
||||||||| | |||||| || |||| |||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
31264087 |
catcatttgcgcgtttaaatgttccagatcctccttaaatatccaatgataaccacaatttttgacctccaaatgcaa |
31264164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 31304872 - 31304800
Alignment:
| Q |
263 |
tttgtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaatttttgacctctaaatgcaa |
335 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||||||| || || ||||| |||||||| |
|
|
| T |
31304872 |
tttgtgggtttaattgctccagatcctcctcaaatatccatctgtaaccacagttctttacctcaaaatgcaa |
31304800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 31247808 - 31247736
Alignment:
| Q |
422 |
ttccctagggagaaaaattagcaacatgtgttctaagtcaacagtgaccagatcgttttcaagatgcatggga |
494 |
Q |
| |
|
|||||||| || || ||||||||||| ||| ||||| ||||| ||||||||||| ||| ||||||| |||||| |
|
|
| T |
31247808 |
ttccctagtgaaaagaattagcaacaagtgatctaaatcaactgtgaccagatcttttccaagatgtatggga |
31247736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 13615741 - 13615656
Alignment:
| Q |
230 |
tgttttgaaccgaggaatttccaccgtacatcattt--gtgggtttaattgctccaaatcctccttaaatatccatcgataaccacaa |
315 |
Q |
| |
|
|||||||||| |||||||||||| | || ||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13615741 |
tgttttgaactgaggaatttccaac-ta-atcatttgcgggggtttaattgctccaaatcctcctcaaatatccaacgataaccacaa |
13615656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1366 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1366
Description:
Target: scaffold1366; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 1649 - 1711
Alignment:
| Q |
43 |
gtctcatcccttactccaatgggattcacactatgggagttccttttacttgaccaacttatt |
105 |
Q |
| |
|
|||||||| | |||||||| ||| |||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
1649 |
gtctcatctcctactccaaggggcttcacactctgggagttccttctacttgaccagcttatt |
1711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University