View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_7 (Length: 460)
Name: NF18058_low_7
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Original strand, 39770002 - 39770440
Alignment:
| Q |
9 |
acatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagtttgctttataatgatcaaca |
108 |
Q |
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| T |
39770002 |
acatcatcataattctagcttaacatacaaccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagtttgctttataatgatcaac- |
39770100 |
T |
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| Q |
109 |
atcaacaattatgtgtgggcaggggatcaacaattatgtgttgggattcaaatggtagtttcacatgagctaaagaaattatatgtatacgagaggtaat |
208 |
Q |
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| T |
39770101 |
--caacaattatgtgtgggcaggggatcaacaattatgtgttgggattcaaatggtagtttcacatgagctaaataaattatatgtatacgagaggtaat |
39770198 |
T |
|
| Q |
209 |
taatccatatactcattgtcttatatagttttggatggagaattatgttgaagctcccaacactcttctatatacttttacttgtaataattttagaaat |
308 |
Q |
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| T |
39770199 |
taatccatatactcattgtcttatatagttttggatggagaattatgttgaagctcccaacactcttctatatacttttacttgtaataattttagaaat |
39770298 |
T |
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| Q |
309 |
aaaatcctataacaaattgagtttgccatatat----acaaacaaaaacactagttattatttcctccatt-nnnnnnnngttattatttccattgcaac |
403 |
Q |
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| T |
39770299 |
aaaatcctataacaaattgagtttgccatatattaaaacaaacaaaaacactagttattatttcctccattaaaaaaaaagttattatttccattgcaac |
39770398 |
T |
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| Q |
404 |
atacatggaaaatgaaaaattaggagatagcacacacaaaaa |
445 |
Q |
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| T |
39770399 |
atacatggaaaatgaaaaattaggagatagcacacacaaaaa |
39770440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 34979035 - 34978954
Alignment:
| Q |
9 |
acatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagttt |
90 |
Q |
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| T |
34979035 |
acatcatcataattctagcttagaataaacctaagtttagtttacaaagatgttaatctagagatgccacatcatcaagttt |
34978954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 15802612 - 15802544
Alignment:
| Q |
28 |
ttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagtttgctttata |
98 |
Q |
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| T |
15802612 |
ttaacataaacccaaatt--gtttacaaagatggtaatctagagatgccacatcatcaagcttgttttata |
15802544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 30087912 - 30087998
Alignment:
| Q |
9 |
acatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagtttgcttt |
95 |
Q |
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||||||||||||||||||||||| ||| ||| | || || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30087912 |
acatcatcataattctagcttaatatagttccatattttgtctacaaagatgttaatctagagatgccacatcatcaagtttgcttt |
30087998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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