View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18058_low_8 (Length: 441)
Name: NF18058_low_8
Description: NF18058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18058_low_8 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 34100564 - 34100338
Alignment:
| Q |
4 |
aaaacaaaagaggcactgaatcaatgtcattgacttgaattgggaaattaaaatccaaacaaggacataaagaattagtttaattcattccatgacagaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || |
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| T |
34100564 |
aaaacaaaagaggcactgaatcaatgtcattgacttgaattgggaaattaaaatccaaacaaggacataaa-aattagtttaat-cattccatgacataa |
34100467 |
T |
|
| Q |
104 |
cagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatattcattaac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
34100466 |
cagaaaatcccaaattcaaaaaatttgtataaaccctaacacgaaagaaagtgtattaatcacgaaatagattgaagtgcaacaagagatattcattaac |
34100367 |
T |
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| Q |
204 |
agctagaattgaaaagttaaaaagaagaa |
232 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
34100366 |
agctagaattgaaaaggaaaaaagaagaa |
34100338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 34100206 - 34100144
Alignment:
| Q |
366 |
gggaagccctagaaagacaagtaagtatatatagttagtaataataactgagagtataaactg |
428 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34100206 |
gggaagccctagagagacaagtaagtatatatagttagtaataataactgagagtataaactg |
34100144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 34118485 - 34118347
Alignment:
| Q |
96 |
tgacagaacagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatat |
195 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| | ||||||||| | || | ||||| || |
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| T |
34118485 |
tgacagaacagaaaatcccaaattcaaaaggtttgtataaaccctaaccctaaagaaattgtattaatgactgaacagattggaagacagccagagacat |
34118386 |
T |
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| Q |
196 |
tcattaacagctagaattgaaaagttaaaaagaagaaga |
234 |
Q |
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|||||||| ||||||||||||| ||||||||||||| |
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| T |
34118385 |
ccattaacaactagaattgaaaaagaaaaaagaagaaga |
34118347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 34145639 - 34145501
Alignment:
| Q |
96 |
tgacagaacagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatat |
195 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| | ||||||||| | || | ||||| || |
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| T |
34145639 |
tgacagaacagaaaatcccaaattcaaaaggtttgtataaaccctaaccctaaagaaattgtattaatgactgaacagattggaagacagccagagacat |
34145540 |
T |
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| Q |
196 |
tcattaacagctagaattgaaaagttaaaaagaagaaga |
234 |
Q |
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| T |
34145539 |
ccattaacaactagaattgaaaaagaaaaaagaagaaga |
34145501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 34158255 - 34158117
Alignment:
| Q |
96 |
tgacagaacagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatat |
195 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| | ||||||||| | || | ||||| || |
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| T |
34158255 |
tgacagaacagaaaatcccaaattcaaaaggtttgtataaaccctaaccctaaagaaattgtattaatgactgaacagattggaagacagccagagacat |
34158156 |
T |
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| Q |
196 |
tcattaacagctagaattgaaaagttaaaaagaagaaga |
234 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||| |
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| T |
34158155 |
ccattaacaactagaattgaaaaagaaaaaagaagaaga |
34158117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 34089186 - 34089070
Alignment:
| Q |
102 |
aacagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatattcatta |
201 |
Q |
| |
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|||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||| | ||||||||||| | ||||||||| || ||||| |
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| T |
34089186 |
aacaaaaaatcccaaatttaaaaagtttgtataaaccctaaccctaaagaaagtgcattaatcacttaacagattgaaaggtaacaagagacatccatta |
34089087 |
T |
|
| Q |
202 |
acagctagaattgaaaa |
218 |
Q |
| |
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||| |||||||| |||| |
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| T |
34089086 |
acaactagaattaaaaa |
34089070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 34104133 - 34104002
Alignment:
| Q |
100 |
agaacagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatattcat |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||| || ||| ||||||| | |||||| |||| |||||||||| || || |
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| T |
34104133 |
agaacagaaaatcccaaattcaaaacgtttgtataaaccctaaccctaaa-aaggtgcattaatcactgaacagaatgaaagacaacaagagacatatat |
34104035 |
T |
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| Q |
200 |
taacagctagaattgaaaagttaaaaagaagaa |
232 |
Q |
| |
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| ||| ||||||||||||| ||||||||||| |
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| T |
34104034 |
tcacaactagaattgaaaaagaaaaaagaagaa |
34104002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 2636 - 2520
Alignment:
| Q |
102 |
aacagaaaatcccaaattcaaaaaatttgtataaaccctaacccgaaagaaagtgtattaatcgcgaaacagattgaagtgcaacaagagatattcatta |
201 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| | ||||||||||| | ||||| ||| || ||||| |
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| T |
2636 |
aacaaaaaatcccaaattcaaaaagtttgtataaaccctaaccctaaagaaagtgcattaatcacttaacagattgaaaggtaacaaaagacatccatta |
2537 |
T |
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| Q |
202 |
acagctagaattgaaaa |
218 |
Q |
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||| ||||||||||||| |
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| T |
2536 |
acaactagaattgaaaa |
2520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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