View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18059_high_1 (Length: 314)
Name: NF18059_high_1
Description: NF18059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18059_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 34399125 - 34398812
Alignment:
| Q |
1 |
agatcttcccaatgatgcaaaccaaggatcatccctcctgcttgaaaaacagatattatcaatagagtgaaatctatcttaagaaaactctcttgctaat |
100 |
Q |
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| T |
34399125 |
agatcttcccaatgatgcaaaccaaggatcatccctcctgcttgaaaaacagatattatcaatagagtgaaatctatcttaagaaaactctcttgctaat |
34399026 |
T |
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| Q |
101 |
ggcacgtggcataattttacatatctatttcttgctactttccctgatacctgtaaaatttgttgtacgggatctcaactagaaaatacacacagatgca |
200 |
Q |
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| T |
34399025 |
ggcacgtggcataatcttacatatctatttcttgctactttccccgatacccgtagaatttgttgtacgggatctcaactagaaaatacacacagatgca |
34398926 |
T |
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| Q |
201 |
acaggtgatcgaatacacgacaagggacatatgctattatacatgtaaacatcgtctaatgagtggagagacactatagccctatatgggttaaacaact |
300 |
Q |
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| T |
34398925 |
acaggtgatcgaatacacgacaagggacatatgctattatacatgtaaacatcgtctaatgagtggagagacactatagccctatatgggttaaacaact |
34398826 |
T |
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| Q |
301 |
taattaaacgctta |
314 |
Q |
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| T |
34398825 |
taattaaacgctta |
34398812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 34404799 - 34404671
Alignment:
| Q |
1 |
agatcttcccaatgatgcaaaccaaggatcatccctcctgcttgaaaaacagatattatcaatagagtgaaatctatcttaagaaaactctcttgctaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34404799 |
agatcttcccaatgatgcaaaccaaggatcatccctcctgcttgaaaaacagatattatcaatagagtgaaatctatcttaagaaaactctcttgctaat |
34404700 |
T |
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| Q |
101 |
ggcacgtggcataattttacatatctatt |
129 |
Q |
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| T |
34404699 |
ggcacgtggcataattttacatatctatt |
34404671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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