View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18059_low_1 (Length: 367)
Name: NF18059_low_1
Description: NF18059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18059_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 8518720 - 8519052
Alignment:
| Q |
16 |
agcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaac |
115 |
Q |
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| T |
8518720 |
agcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacaacatgttcaatactactacttctaac |
8518819 |
T |
|
| Q |
116 |
caaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttca |
215 |
Q |
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| T |
8518820 |
caaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaaggtccatttgcaatttca |
8518919 |
T |
|
| Q |
216 |
accttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtggtt |
315 |
Q |
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| T |
8518920 |
accttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtggct |
8519019 |
T |
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| Q |
316 |
ttgtttgaattacaccataacgaagtgtacctt |
348 |
Q |
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| T |
8519020 |
ttgtttgaattacaccataacgaagtgtacctt |
8519052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 8526814 - 8527148
Alignment:
| Q |
16 |
agcaatgatcaatccaaatattagaagaagcaaaaacactaattccatcaccatcagaacgttgacgatgtacagcatgttcaatactactacttctaac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||| || |||||||||||||||| || ||| |
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| T |
8526814 |
agcaatgatcaatccaaatattagaagaagcaaaaacacttataccatcaccatcagaaccttgtcgataaccaacatgttcaatactactcct---aac |
8526910 |
T |
|
| Q |
116 |
caaaccaggattacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttca |
215 |
Q |
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|| ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||| |
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| T |
8526911 |
cataccaggattacttggtttacaatcatgaatactaataccatgcacaatcacatgactaacaccctgtattgtaatacatggtccatttccaatttca |
8527010 |
T |
|
| Q |
216 |
accttaaaacctctaccatcaattgtcttgtaactattcaacataagctcgtttttcagcttaattaccatgtcttttgcaaatgttatccaaagtggtt |
315 |
Q |
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|| ||| |||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||||||||||| |||| |||| ||||||||| ||||| |
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| T |
8527011 |
actttagcacctctaccatcaattgttttgtaactattcacaataagttcatttttcaatttaattaccatgtcatttgaaaatattatccaaactggtt |
8527110 |
T |
|
| Q |
316 |
ttgtttgaattacaccataacgaagtgtaccttctttt |
353 |
Q |
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| T |
8527111 |
ctgcttgaattacaccataacgaagtgtaccttttttt |
8527148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 55373805 - 55373934
Alignment:
| Q |
126 |
ttacttggtttacaataatgaatcataattccatgcacaatcacatgactaacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaac |
225 |
Q |
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|||||||||||||||| |||||| |||||||||| | ||| |||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| | |
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| T |
55373805 |
ttacttggtttacaatcatgaatgctaattccatgtataataacatgactaacaccttgtattgtaatacaaggtccatttccaatctcaactttaactc |
55373904 |
T |
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| Q |
226 |
ctctaccatcaattgtcttgtaactattca |
255 |
Q |
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| T |
55373905 |
ctctaccatcaatagtcttgtaactattca |
55373934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 7593607 - 7593679
Alignment:
| Q |
175 |
taacattatgtattgtaatacaagctccatttgcaatttcaaccttaaaacctctaccatcaattgtcttgta |
247 |
Q |
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|||||| ||||||||||||||| | ||||||||||| | ||| || |||||| ||||||||||||||||| |
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| T |
7593607 |
taacataatgtattgtaatacatccaccatttgcaatgtgaacactagcacctcttccatcaattgtcttgta |
7593679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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