View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18059_low_3 (Length: 239)
Name: NF18059_low_3
Description: NF18059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18059_low_3 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 7858476 - 7858648
Alignment:
| Q |
56 |
tagggaataacacacaaggatacaattctggtgccaccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctccatct |
155 |
Q |
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| T |
7858476 |
tagggaataacacacaaggatacaattctggtgccaccatttgtccccacctagttccggttagtggaagactacacctcaagctaagttttctccatct |
7858575 |
T |
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| Q |
156 |
caactttcaaatgcgtacattcactacgtctttcaccttgtcatctacaccttccaggctaatcatgagtatt |
228 |
Q |
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| T |
7858576 |
caacttccaaatgcgtacattcactacgtctttcaccttgtcatctacaccttccaggctaatcatgagtatt |
7858648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7858333 - 7858388
Alignment:
| Q |
1 |
cctttaaatatcttcttctctcttgaagatccttgggcccaactacactagtcatt |
56 |
Q |
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| T |
7858333 |
cctttaaatgtcttcttctctcttgaagatccttgggcccaactacactagtcatt |
7858388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 33350813 - 33350670
Alignment:
| Q |
84 |
tggtgccaccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctccatctcaactttcaaatgcgtacattcactacg |
183 |
Q |
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| T |
33350813 |
tggtgccaccatttatcttcacctagtttcact-agtagaatactccacttcaagccgagttttctccacctcaacttttaaatatgtacattcactatg |
33350715 |
T |
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| Q |
184 |
tctttcaccttgtcatctacaccttccaggctaatcatgagtatt |
228 |
Q |
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| T |
33350714 |
tctttcaccttgtcatctccacctcccacactgatcatgagtatt |
33350670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 33351077 - 33351044
Alignment:
| Q |
17 |
tctctcttgaagatccttgggcccaactacacta |
50 |
Q |
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| T |
33351077 |
tctctcttgaagatccttggacccaactacacta |
33351044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 27907584 - 27907502
Alignment:
| Q |
92 |
ccatttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctccatctcaactttcaaatgcgtacat |
175 |
Q |
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| T |
27907584 |
ccatttgtctccaccta-ttcccactagtggaagactccacctcaaaccgagtcttcttcatctcaacttccaaatgtgtacat |
27907502 |
T |
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Target: scaffold0219 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 23088 - 23138
Alignment:
| Q |
145 |
tttctccatctcaactttcaaatgcgtacattcactacgtctttcaccttg |
195 |
Q |
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| T |
23088 |
tttctccacctcaacttccaaatgcgtacatccattatgtctttcaccttg |
23138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 41139188 - 41139106
Alignment:
| Q |
117 |
tagtggaagactacacctcaaactaagttttctccatctcaactttcaaatgcgtacattcactacgtctttcaccttgtcat |
199 |
Q |
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| T |
41139188 |
tagtggaagacttcccctcaatctgagatttctccatctcatcttccaaacggatacacccactatgtctttcaccttgtcat |
41139106 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 9445086 - 9445151
Alignment:
| Q |
94 |
atttgtctccacctagttccggttagtggaagactacacctcaaactaagttttctccatctcaactt |
161 |
Q |
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| T |
9445086 |
atttgtctccacctagttccg--tagtggaagactctacctcaagctgaatttcctccacctcaactt |
9445151 |
T |
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