View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_high_15 (Length: 217)
Name: NF1805_high_15
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 7329948 - 7329767
Alignment:
| Q |
17 |
attctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagatatgtactgcagtggtaatttcataatagagt |
116 |
Q |
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| T |
7329948 |
attctcaagtttatagcatcttataatatgccaacaagttgcaaactgtagtgcttggaactatcagatatgtactgcagtggtaatttcctaatagagt |
7329849 |
T |
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| Q |
117 |
tttcctcattctcaagtttccaaagctcatttcattcatttcagattcattagttacatgaccttaaatcagaactggatgc |
198 |
Q |
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| T |
7329848 |
tttcctcattctcaagtttccaaagttcatttcattcatttcagattcattagttacatgaccttaaatcagaactggatgc |
7329767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 7310115 - 7310213
Alignment:
| Q |
101 |
aatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgc |
198 |
Q |
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| T |
7310115 |
aatttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgc |
7310213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
104 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
151 |
Q |
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| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 7310039 - 7310079
Alignment:
| Q |
45 |
tgccaacaagttgcaaactgtagtgcttggaactatcagat |
85 |
Q |
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| T |
7310039 |
tgccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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