View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_high_5 (Length: 348)
Name: NF1805_high_5
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 11563903 - 11563579
Alignment:
| Q |
13 |
aatattgaattgaattagagagtgactcatgtaaatgtaaatggaattatagtactttctatgttttggaatcatgctgtccctttttgtatgnnnnnnn |
112 |
Q |
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| T |
11563903 |
aatattgaattgaattagag--tgactcatgcaaatgtaaatggaattatagtactttctatgttttggaatcatgctgtccctttttgtatgttttttt |
11563806 |
T |
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| Q |
113 |
naacggcaaacaattt--atatatgtatctctatgtatagagaaaacgcttttactttccatatttgcaagatagtcagggctatatttgagcagggcga |
210 |
Q |
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| T |
11563805 |
-aacggaaaacaatttttatatatgtatctctatatatagagaaagcgcttttactttccatatttgcaagatagtcagggctatatttgagcagggcga |
11563707 |
T |
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| Q |
211 |
ggagggcgacgccgaccgccctaagcctnnnnnnntaagtattaaatttgggccc------agcnnnnnnnnttgggtttattaggccttaaaaaagtta |
304 |
Q |
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| T |
11563706 |
ggagggcgacgccgaccg-cctaggcctaaaaacataagtatcaaatttgggccccaacaaaaaaaataaaatcgggttcattaggccttaaaaaagtta |
11563608 |
T |
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| Q |
305 |
cttaaattctaatgggaggtgtgattgtt |
333 |
Q |
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| T |
11563607 |
cttaaattctaatgggaggtgtgattgtt |
11563579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 11431563 - 11431637
Alignment:
| Q |
13 |
aatattgaattgaattagagagtgactcatgtaaatgtaaatggaattatagtactttctatgttttggaatcatgc |
89 |
Q |
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| T |
11431563 |
aatattgaattgaattagag--tgactcatgcaaatgtaaatggaattatagtactttctatgttttggaatcatgc |
11431637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 44512976 - 44512923
Alignment:
| Q |
279 |
gggtttattaggccttaaaaaagttacttaaattctaatgggaggtgtgattgtt |
333 |
Q |
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|||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44512976 |
gggtttgttaggccataaaaaa-ttacttaaattctaatgggaggtgtggttgtt |
44512923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 46264154 - 46264101
Alignment:
| Q |
280 |
ggtttattaggccttaaaaaagttacttaaattctaatgggaggtgtgattgtt |
333 |
Q |
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|||| ||||| || ||||||| ||||||||||||||||||||||| || ||||| |
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| T |
46264154 |
ggttcattagaccctaaaaaaattacttaaattctaatgggaggtatggttgtt |
46264101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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