View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_high_8 (Length: 297)
Name: NF1805_high_8
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 6391713 - 6391979
Alignment:
| Q |
13 |
tcatcaaaggagttaaactctgcttgatcgttttgtaatctaaccagcgctcttaattcaggtgtctcatattgagatattgatttgatggtgttaacaa |
112 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6391713 |
tcatcaaaggagttaaactctacttgatcattttgtaatcttactagcgatcttaattgaggtgtctcatattgagatattgatttgatggtgttaacaa |
6391812 |
T |
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| Q |
113 |
caaagtctgacgatttctgagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattatagtaacaa |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6391813 |
caaagtctgacgatttcggagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattatagtaacaa |
6391912 |
T |
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| Q |
213 |
aatatgttttctcgaaataagtaaaaatatatatcataacaaaaaattgcaaacagacacgagtgtt |
279 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
6391913 |
aatatgttttgtcgaaataagtaaaaatatatatcacaacaaaaaattgcaaacagacacaagtgtt |
6391979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 6410877 - 6411143
Alignment:
| Q |
13 |
tcatcaaaggagttaaactctgcttgatcgttttgtaatctaaccagcgctcttaattcaggtgtctcatattgagatattgatttgatggtgttaacaa |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||||| |||||| ||||||||||| |
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| T |
6410877 |
tcatcaaaggagttaaactctggttgatcgttttgtaatctaactagcgatcttaattgaggtgtctcatgttgagatattaatttgagggtgttaacaa |
6410976 |
T |
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| Q |
113 |
caaagtctgacgatttctgagggataattaattcatctcttggaatgtaaaaatagttactccgactctcagtctctggatctgttcattatagtaacaa |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6410977 |
caaagtctgacgatttctgagggatgattaattcatctcttggaatgtaaaaatatccactccgactctcggtctctggatctgttcattatagtaacaa |
6411076 |
T |
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| Q |
213 |
aatatgttttctcgaaataagtaaaaatatatatcataacaaaaaattgcaaacagacacgagtgtt |
279 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||| |||| |||||| |
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| T |
6411077 |
aatatgttttgtcgaaataagtaaaaatatatatcacaacaaaatattgtaaacatacacaagtgtt |
6411143 |
T |
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