View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1805_low_1 (Length: 506)
Name: NF1805_low_1
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 165 - 489
Target Start/End: Complemental strand, 34303271 - 34302947
Alignment:
| Q |
165 |
cttacgaacatctagtaagttgtttatataaattgtccgaaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaatatgcc |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34303271 |
cttaagaacatctagtaagttgtttatataaattgtccgaaacagtcttacaagggcttatgtcggtagataagctcaaacaagtcaattcaaatatgcc |
34303172 |
T |
|
| Q |
265 |
ctatttgtgaatagataaaaataatcttcttgaatgggataacaaaagtatagtcaacatcattaaggtgcataaatcaaccactaatgatcaattaact |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34303171 |
ctatttgtgaatagataaaaataatcttcttgaatgggataacaaaagtatagtcaacatcattaaggtgcataaatcaaccactaatgatcaattaact |
34303072 |
T |
|
| Q |
365 |
aaatgctttattgaattgatttaacctataaaaggaatatttcaaaatatggattggatggacaataccttagtgacatatctacaacccttctctccat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34303071 |
aaatgctttattgaattgatttaacctaaaaaaggaatatttcaaaatatggattggatggacaataccttagtgacatatctacaacccttctctccat |
34302972 |
T |
|
| Q |
465 |
cagtgataataagcagcttcaactt |
489 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34302971 |
cagtgataataagcagcttcaactt |
34302947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 34303447 - 34303288
Alignment:
| Q |
13 |
aatatttccaatgatggatgaatagtttaagattacaataggaattgtagctcaaatatcggccacatttcaataaacagtttaagtaagcacttttagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34303447 |
aatatttccaatgatggatgaatagtttaagattacaataggaattgtagctcaaatatcggccacatttcaatatacagtttaagtaagcacttttagt |
34303348 |
T |
|
| Q |
113 |
acaagcttttgtcaagctagttataaactctttcataagctactatgaagagcttacgaa |
172 |
Q |
| |
|
| |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
34303347 |
ataagcttttgtgaagctagttataaactgtttcataagctactatgaagaacttacgaa |
34303288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 27807210 - 27807260
Alignment:
| Q |
204 |
aaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaatt |
254 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
27807210 |
aaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtcaatt |
27807260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 2457036 - 2457090
Alignment:
| Q |
204 |
aaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaa |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || |||||| ||| |||| |||| |
|
|
| T |
2457036 |
aaacagtcttacaagtgcttatgtcggtagataatctcaaataagccaatccaaa |
2457090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 41057240 - 41057313
Alignment:
| Q |
194 |
aaattgtccgaaacagtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaatatgcccta |
267 |
Q |
| |
|
||||| ||| ||||||||| ||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||||| |
|
|
| T |
41057240 |
aaattctcccaaacagtctcacaagtgcttatgcatgtagataagctcaaataagccaattcaaataggcccta |
41057313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 1821928 - 1821980
Alignment:
| Q |
208 |
agtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaata |
260 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
1821928 |
agtcttacaagtgtttatgtcggtatctaagctcaaataagtcaattcaaata |
1821980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Original strand, 1856373 - 1856425
Alignment:
| Q |
208 |
agtcttacaagggcttatgtcggtagaaaagctcaaacaagtcaattcaaata |
260 |
Q |
| |
|
||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
1856373 |
agtcttacaagtgtttatgtcggtatctaagctcaaataagtcaattcaaata |
1856425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University