View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_11 (Length: 279)
Name: NF1805_low_11
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 19745593 - 19745846
Alignment:
| Q |
18 |
acacgcgcgcgcgtaattatatgcttgttcagcatacattttcctcaaccctaaatctatcatcatcttttaaaactacaacattatcatttatgaatca |
117 |
Q |
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| T |
19745593 |
acacgcacgcgcgtaattatatgcttgttcagcatacattttcctcaaccctaaatctatcatcctcttttaaaactacaacattatcatttatgaatca |
19745692 |
T |
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| Q |
118 |
aacaagtaaacaaccatttgcataagacgatatataagttaatatatcatatatgaacttcaacataactaaatatccaaatcataacccaaattgagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19745693 |
aacaagtaaacaaccatttgcataagacgatatataagttaatatatcatatataaacttcaacataactaaatatccaaatcataacccaaattgagaa |
19745792 |
T |
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| Q |
218 |
aaatcgtagcatgttgtgcatacctcaagcttattatttcctacttcctatgct |
271 |
Q |
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| T |
19745793 |
aaaccgcagcatgttgtgcatacctcaagcttattatatcctagttcctatgct |
19745846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 34860673 - 34860776
Alignment:
| Q |
100 |
attatcatttatgaatcaaacaagtaaacaaccatttgcataagacgatatataagttaatatatcatatatgaacttcaacataactaaatatccaaat |
199 |
Q |
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|||||||||| ||| |||||||||| ||||| ||||| ||||| | ||||||||| | || ||||||||||||||||||||||||||| |||||||| |
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| T |
34860673 |
attatcatttttgagtcaaacaagtgcacaacaatttgaataagctaaaatataagttcacatgtcatatatgaacttcaacataactaaagatccaaat |
34860772 |
T |
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| Q |
200 |
cata |
203 |
Q |
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|||| |
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| T |
34860773 |
cata |
34860776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 24023164 - 24023072
Alignment:
| Q |
113 |
aatcaaacaagtaaacaaccatttgcataag-acgatatataagttaatatatcatatatgaacttcaacataactaaatatccaaatcataa |
204 |
Q |
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| T |
24023164 |
aatcaaacaagtaaacaaccatttgcacatggatgatatgtaagttaatatatcatatatgaacttcaacataaataaagatccaagtcataa |
24023072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 24025983 - 24025924
Alignment:
| Q |
121 |
aagtaaacaaccatttgcataagacgatatataagttaatatatcatatatgaacttcaa |
180 |
Q |
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| T |
24025983 |
aagtaaacaatcctttgtataagatgatatataagttaatataacatatatgaacttcaa |
24025924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 5757513 - 5757567
Alignment:
| Q |
115 |
tcaaacaagtaaacaaccatttgcataagacgatatataagttaatatatcatat |
169 |
Q |
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| T |
5757513 |
tcaaacaagtgaacaactattaatataagatgatatataagttaatatatcatat |
5757567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 23846316 - 23846368
Alignment:
| Q |
152 |
taagttaatatatcatatatgaacttcaacataactaaatatccaaatcataa |
204 |
Q |
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|||||||||||||||||||||||||| || |||| ||| |||||| |||||| |
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| T |
23846316 |
taagttaatatatcatatatgaactttaatataaaaaaagatccaagtcataa |
23846368 |
T |
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