View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_12 (Length: 273)
Name: NF1805_low_12
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 52409707 - 52409457
Alignment:
| Q |
15 |
tcttcatcatcacattgtatttcatnnnnnnn--ttggattctcagcttgttttgtcttacaaaagttgaatacagcttgagcatctccaatatcaagat |
112 |
Q |
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| T |
52409707 |
tcttcatcatcacattgtatttcataaaaaaaatttggatcctcagcttgctttgtcttacaaaagttgaatacagcttgagcatctccaattacaagat |
52409608 |
T |
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| Q |
113 |
tccttcttcgaagttttctaaggtaattccaacaatctttactnnnnnnngacatattacctccattattgaacatttcaacaacctttcctgtaggtcc |
212 |
Q |
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| T |
52409607 |
tccttcttcgaagatttctaaggtgattccaacaatctctactagaaaaagaca---tacctccactattgaacattttagcaacctttcctgtaggtat |
52409511 |
T |
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| Q |
213 |
tccctcctcatcaaacttctcaacaagactcctagctggcatacctatattctt |
266 |
Q |
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| T |
52409510 |
tccctcctcatcaaacttctcaacaagactcctagctggcatacccattttctt |
52409457 |
T |
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Back To:
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Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 7776008 - 7776257
Alignment:
| Q |
15 |
tcttcatcatcacattgtatttcatnnnnnnn--ttggattctcagcttgttttgtcttacaaaagttgaatacagcttgagcatctccaatatcaagat |
112 |
Q |
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| T |
7776008 |
tcttcatcatcacattgtatttcataaaaaaaaattggattctcagcttgctttgtcttacaaaagttgaatacaacttgagcatctccaattacaagat |
7776107 |
T |
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| Q |
113 |
tccttcttcgaagttttctaaggtaattccaacaatctttactnnnnnnngacatattacctccattattgaacatttcaacaacctttcctgtaggtcc |
212 |
Q |
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| T |
7776108 |
tccttcttcgaagatttctaaggtgattccaacaatctctactagaaaaagaca---tacctccactattgaacatttcatcaacctttcctgtaggt-a |
7776203 |
T |
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| Q |
213 |
tccctcctcatcaaacttctcaacaagactcctagctggcatacctatattctt |
266 |
Q |
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| T |
7776204 |
ttcctcctcatcaaacttctcaacaagactcctagctggcatacccattttctt |
7776257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 39043870 - 39043916
Alignment:
| Q |
74 |
aaaagttgaatacagcttgagcatctccaatatcaagattccttctt |
120 |
Q |
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| T |
39043870 |
aaaaattgaatacagcttgagcatctccaatatcaagattccttctt |
39043916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 23204995 - 23205061
Alignment:
| Q |
47 |
ttggattctcagcttgttttgtcttacaaaagttgaatacagcttgagcatctccaatatcaagatt |
113 |
Q |
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| T |
23204995 |
ttgggttctctgcttgtttttgcttacaaaagtttaacactgcttgagcatctccaacatccagatt |
23205061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 6060229 - 6060165
Alignment:
| Q |
85 |
acagcttgagcatctccaatatcaagattccttcttcgaagttttctaaggtaattccaacaatc |
149 |
Q |
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| T |
6060229 |
acagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatc |
6060165 |
T |
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