View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_13 (Length: 255)
Name: NF1805_low_13
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 18714988 - 18715205
Alignment:
| Q |
16 |
ataccatccaaccactgataa-tccaaacaaatgtatcattctttttaattcaatggtcctttatgttatttaattatattagattgtcatttatcattc |
114 |
Q |
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| T |
18714988 |
ataccatccaaccactgatcagtccaaacaaatgtatcattctttttaattcaatggtcctttatgttatttaattatattagattgtcttttatcattc |
18715087 |
T |
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| Q |
115 |
ttttttctcatgtgcgtcttttat-attacaaacacgcacaagtttatctctttatgttttttcttcatttttattagaaaactgatga---ggtggtaa |
210 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18715088 |
ttttttctcatgtgtgtcttttatcattacaaacacgcacaagtttatctctttatgttttttcttcatttttattagaaaactgatgaggtggtggtaa |
18715187 |
T |
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| Q |
211 |
gtcacataggataatttg |
228 |
Q |
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||||||||||||| |||| |
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| T |
18715188 |
gtcacataggatagtttg |
18715205 |
T |
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