View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_18 (Length: 201)
Name: NF1805_low_18
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 188
Target Start/End: Complemental strand, 40776374 - 40776195
Alignment:
| Q |
10 |
tagattattctgtttgttgctagagatagagaaagtgcatagctttttccatgtgtgttaggttgccactcattcctcatcaaatttc-aaaggggaaat |
108 |
Q |
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| T |
40776374 |
tagatttttctgtttgttgctagagatagagaaagtgcatagctttttccatgtgtgttaggttgccactcattcctcatcaaatttcaaaaggggaaat |
40776275 |
T |
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| Q |
109 |
ggacaagctagttcaactcaacgagattttacgtccacaaaaaattcatataattttcacgaaaaacaattatattgttg |
188 |
Q |
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| T |
40776274 |
ggacaagctagttcaacgcaacgagatttcaagtccacaaaaaattcatataattttaacgaaaaataattatattgttg |
40776195 |
T |
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