View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_2 (Length: 426)
Name: NF1805_low_2
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 25093953 - 25093542
Alignment:
| Q |
7 |
aagaatatcttgtcattgggctttgtttgttcattacattaaaatatgtggttctcttcatatgacacttagtgttatttggtacatttctcagcacttg |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25093953 |
aagaaaatcttgtcattgggctttgtttgttcattacattgaaatatgtggttctcttcatatgacacttggtgttatttggtacatttctcagcacttg |
25093854 |
T |
|
| Q |
107 |
gggaggtcacttggaggtggtaatagagattcatttggtcctttaccattgtccacaacaaatgccatcttcagtccccatgttgtatgaatttccaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25093853 |
gggaggtcacttggaggtggtaatagagattcatttggtcctttaccattgtccacaacaaatgccatcttcagtccccatgttgtatgaatttccaaat |
25093754 |
T |
|
| Q |
207 |
gacaatgcataaaccacacccctaacaaaatataataccatactttaattaccacaatacatatatttaaaaatcatcactgatcactagaaagaatcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25093753 |
gacaatgcataaaccacacccctaacaaaatataataccatactttaattaccacaatacatatatttaaaaatcatcactgatcactagaaagaatcaa |
25093654 |
T |
|
| Q |
307 |
gattcatcaatagaatcaacatatttatcataatctaagaagcaaagacactcttcagattagaagtgcttcagtg-------tgtgttgtatccgacac |
399 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
25093653 |
gattcatcaatagaatcaac--atttatcataatctaagaagcacgaacactcttcagattagaagtgcttcagtgtcggacatgtgttgtgtccgacac |
25093556 |
T |
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| Q |
400 |
cgacacatataatt |
413 |
Q |
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| T |
25093555 |
cgacacatataatt |
25093542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 29555376 - 29555241
Alignment:
| Q |
94 |
ttctcagcacttggggaggtcacttggaggtggtaatagagattcatttggtcctttaccattgtccacaacaaatgccatcttcagtccccatgttgta |
193 |
Q |
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|||||| |||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
29555376 |
ttctcaacacttgggaaggtcacttggaggtggtagtaaagattcatttggtcctttaccattgtccacaacaaatgccatcttcaatccccaagttgtg |
29555277 |
T |
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| Q |
194 |
tgaatttccaaatgacaatgcataaaccacacccct |
229 |
Q |
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| T |
29555276 |
tgaatttccaaatgacaatgcataaaccatacccct |
29555241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 4385061 - 4384985
Alignment:
| Q |
146 |
cctttaccattgtccacaacaaatgccatcttcagtccccatgttgtatgaatttccaaatgacaatgcataaacca |
222 |
Q |
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| T |
4385061 |
cctttgccattgtccaccaaaaaggccatctttagaccccatgttgtatgcacctccaaatggcaatgcatgaacca |
4384985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 21854762 - 21854701
Alignment:
| Q |
168 |
atgccatcttcagtccccatgttgtatgaatttccaaatgacaatgcataaaccacacccct |
229 |
Q |
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|||||||||| || ||||| |||| || |||||||| ||||||||||| |||||||||||| |
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| T |
21854762 |
atgccatcttaagaccccaacttgtgtggatttccaagtgacaatgcatgaaccacacccct |
21854701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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