View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_3 (Length: 404)
Name: NF1805_low_3
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 53 - 389
Target Start/End: Original strand, 21382 - 21720
Alignment:
| Q |
53 |
actcgttaacatttccgttagactttttataagtgtctttaaaatacttgttagtatttcccttnnnnnnncacctaaaatagaatagtcagatcaataa |
152 |
Q |
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| T |
21382 |
actcgttaacatttcctttagtctttttataagtgtctttagaatacttgtcagtatttcccttaaaaaa-cacctaaaatagaatagtcagatcaataa |
21480 |
T |
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| Q |
153 |
aattcatataaaactaata---tcctatattgatattaattgatccaaaatattgtatgtataatgtccacgtgctatatcaagttatcttcaaaaacct |
249 |
Q |
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| T |
21481 |
aaatcatataaaactaatacaatcctatattgatattaattgatccaaaatattgtatgtataatgtccacgtgctatatcaagttatcttcaaaaacct |
21580 |
T |
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| Q |
250 |
tttggttcaattattcaatactgctacaacttacaataacgatgccaaagaaaaaagtacatagaagacggttgtgatggtctctattttttggactcat |
349 |
Q |
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| T |
21581 |
tttggttcaattattcaatactgttacaacttacaataacgatgccaaagaaaaaagtacatagaagacggttgtgatggtctctattttttggactcat |
21680 |
T |
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| Q |
350 |
gctcattacaatcaccatcgataaaccacatttaatagct |
389 |
Q |
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| T |
21681 |
gctcattacaatcaccatcgataaaccacatttaatagct |
21720 |
T |
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