View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_4 (Length: 378)
Name: NF1805_low_4
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 5201696 - 5202065
Alignment:
| Q |
7 |
gttgtaaccttccaattcatccaataactccctaaaaaggttttcttcccaaacaaataaaattatcattgttattaatgtttgaaaaataaactatatt |
106 |
Q |
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| T |
5201696 |
gttgtaaccttccaattcatccaataactccctaagaaggttttcttcccaaacaaataaaattatcattgttattaatgtttgaaaaataaactgtatt |
5201795 |
T |
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| Q |
107 |
ttaatgatatttggtaacaaattaaattaagcttgagatatacacatttgcttgtggatcaaaatcaaaatcttatagcaaagtctattaatactctgat |
206 |
Q |
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| T |
5201796 |
ttaatgatatttggtaacaaattaaattaagcttgagatatacacatttgtttgtggatcaaaatcaaaatcttatagcaaagtctattaatactctgat |
5201895 |
T |
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| Q |
207 |
gatgcactaataatacatttggnnnnnnntgtgggatattaaaaacnnnnnnnnnnnngaga----------tctttgacgtccttcaaaatgtaaggat |
296 |
Q |
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| T |
5201896 |
gatgcactaataatacatttgaaaacaaatgtgggatattaaaaacttttttttttgagatatatggattattctttggcgtccttcaaaatgcaaggat |
5201995 |
T |
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| Q |
297 |
aaaaaagatatttaatcattaaattacttgcaaatgtaagtttcaagtttcgactagacaagggatcttc |
366 |
Q |
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| T |
5201996 |
aaaaaagatatttaatcgttaaattacttgtaaatgtaagtttcaagtttcgactagacaagggatcttc |
5202065 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 2031418 - 2031458
Alignment:
| Q |
26 |
tccaataactccctaaaaaggttttcttcccaaacaaataa |
66 |
Q |
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| T |
2031418 |
tccaataactccctgagaaggttttgttcccaaacaaataa |
2031458 |
T |
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