View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1805_low_5 (Length: 349)
Name: NF1805_low_5
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1805_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 147 - 340
Target Start/End: Original strand, 25414358 - 25414549
Alignment:
| Q |
147 |
gggtaggcacaataccatataagattttgagtttaacctaattgaacacttataaaactgatttgtaaggtgacaactatccaccagttacaaacacata |
246 |
Q |
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| T |
25414358 |
gggtaggcacgataccatctaagattttgagtttaacctaactaaacccttataaaaccgatttgtaaggtgacaactatccacaagttacaaacacat- |
25414456 |
T |
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| Q |
247 |
ttcagattttatctcttctaacaaacaattcacccatcacataaaatttatttgggtcctaacctattcaagtaggatacattccaagaataat |
340 |
Q |
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| T |
25414457 |
-tcagattttatctcttctaacaaacaattcacccatcacataaaatttatttgggtcctaacctattcaagtaggatacattccaaaaataat |
25414549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 25414258 - 25414359
Alignment:
| Q |
1 |
ctgtgattgcataatatttttggaaactgggttgtaaggttagactgtcccggctacaaaacttttaaaacatctccctcacgcgtaagacatgacattt |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25414258 |
ctgtgattgaataatatttttggaaactgggttgtaaggttagactgtctccgctacaaaacttttaaaacatctccctcacgcgtaagacatgacattt |
25414357 |
T |
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| Q |
101 |
gg |
102 |
Q |
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| T |
25414358 |
gg |
25414359 |
T |
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