View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1805_low_7 (Length: 307)

Name: NF1805_low_7
Description: NF1805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1805_low_7
NF1805_low_7
[»] scaffold0654 (2 HSPs)
scaffold0654 (6-291)||(6421-6706)
scaffold0654 (6-108)||(5067-5169)
[»] scaffold0014 (1 HSPs)
scaffold0014 (6-291)||(116340-116625)
[»] chr5 (4 HSPs)
chr5 (237-289)||(37588375-37588427)
chr5 (237-289)||(37690651-37690704)
chr5 (237-289)||(37526214-37526266)
chr5 (237-289)||(15074764-15074816)
[»] chr3 (3 HSPs)
chr3 (237-289)||(14548736-14548788)
chr3 (238-288)||(26542541-26542591)
chr3 (238-278)||(13371131-13371171)
[»] chr6 (2 HSPs)
chr6 (238-286)||(2460167-2460214)
chr6 (238-278)||(20512660-20512700)
[»] chr4 (2 HSPs)
chr4 (238-286)||(27123368-27123415)
chr4 (235-264)||(11264329-11264358)
[»] chr7 (2 HSPs)
chr7 (235-285)||(12792706-12792756)
chr7 (229-278)||(28165105-28165155)
[»] chr2 (4 HSPs)
chr2 (235-285)||(43205316-43205366)
chr2 (238-283)||(37034031-37034076)
chr2 (237-285)||(1939347-1939395)
chr2 (238-290)||(43065466-43065518)
[»] chr8 (2 HSPs)
chr8 (237-278)||(11795106-11795147)
chr8 (237-285)||(12361199-12361247)
[»] chr1 (2 HSPs)
chr1 (240-289)||(15515544-15515593)
chr1 (237-285)||(35179146-35179194)
[»] scaffold0089 (1 HSPs)
scaffold0089 (238-278)||(33643-33683)


Alignment Details
Target: scaffold0654 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 6421 - 6706
Alignment:
Q  6 cacagattcattacttttctagacacaaattctggaaacacagacaggtccactccacagacagcataaccacactaccaagcacggtatcaaaatcacg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6421 cacagattcattacttttctagacacaaattctggaaacacagacaggtccactccacagacagcataaccacactaccaagcacggtatcaaaatcacg 6520  T
Q  106 tatgtctagtatttcatgctaggcttggtattagctatcagaaaagttttgcacctcaattaagaaagctatcaaatgcttccaaattaaggaataacta 205  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||     
T  6521 tatatctagtatttcatgctaggcttggtattagctatcagaaaagttttgcacctcaattaagaaagctatcaaatgcttcaaaattaaagaataactt 6620  T
Q  206 atttctataaaatatccaattaggttcataactgttttcaacttatttccataagctctgcataataacttatcaaaacaactttt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6621 atttctataaaatatccaattaggttcataactgttttcaacttatttccataagctctgcataataacttatcaaaacaactttt 6706  T

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Target: scaffold0654; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 5067 - 5169
Alignment:
Q  6 cacagattcattacttttctagacacaaattctggaaacacagacaggtccactccacagacagcataaccacactaccaagcacggtatcaaaatcacg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5067 cacagattcattacttttctagacacaaattctggaaacacagacaggtccactccacagacagcataaccacactaccaagcacggtatcaaaatcacg 5166  T
Q  106 tat 108  Q
    |||    
T  5167 tat 5169  T

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Target: scaffold0014 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 116340 - 116625
Alignment:
Q  6 cacagattcattacttttctagacacaaattctggaaacacagacaggtccactccacagacagcataaccacactaccaagcacggtatcaaaatcacg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  116340 cacagattcattacttttctagacacaaattctggaaacacagacaggtccactccacagacagcataaccacactaccaagcacggtatcaaaatcacg 116439  T
Q  106 tatgtctagtatttcatgctaggcttggtattagctatcagaaaagttttgcacctcaattaagaaagctatcaaatgcttccaaattaaggaataacta 205  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||     
T  116440 tatttctagtatttcatgctaggcttgttattagctatcagaaaagttttgcacctcaattaagaaagctatcaaatgcttctaaattattgaataactt 116539  T
Q  206 atttctataaaatatccaattaggttcataactgttttcaacttatttccataagctctgcataataacttatcaaaacaactttt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  116540 atttctataaaatatccaattaggttcataactgttttcaacttatttccataagctctgcataataacttatcaaaacaactttt 116625  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 37588375 - 37588427
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 289  Q
    ||||||||| |||||||||||||||||| || |||||||||| ||||||||||    
T  37588375 ctgttttcagcttatttccataagctctccagaataacttatgaaaacaactt 37588427  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 37690651 - 37690704
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataac-ttatcaaaacaactt 289  Q
    ||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||    
T  37690651 ctgttttcagcttatttccataagctctccataataactttatgaaaacaactt 37690704  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 37526214 - 37526266
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 289  Q
    ||||||||| |||||||||||||||||| || || ||||||| ||||||||||    
T  37526214 ctgttttcagcttatttccataagctctccagaacaacttatgaaaacaactt 37526266  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 15074764 - 15074816
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 289  Q
    ||||||||| |||||||||||||||| | ||  ||||||||| ||||||||||    
T  15074764 ctgttttcagcttatttccataagctttccagtataacttatgaaaacaactt 15074816  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 14548736 - 14548788
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaacaactt 289  Q
    ||||||||| |||||||||||||||||| || |||||||||| ||||||||||    
T  14548736 ctgttttcagcttatttccataagctctccagaataacttatgaaaacaactt 14548788  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 26542591 - 26542541
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttatcaaaacaact 288  Q
    |||||||||||||||||||||| |||| ||||||| ||||| |||| ||||    
T  26542591 tgttttcaacttatttccataaactctccataatagcttatgaaaataact 26542541  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 13371171 - 13371131
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttat 278  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  13371171 tgttttcagcttatttccataagctcttcataatagcttat 13371131  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 2460167 - 2460214
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttatcaaaacaa 286  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  2460167 tgttttcaacttatttccataagctctccataatagctta-caaaacaa 2460214  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 20512660 - 20512700
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttat 278  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  20512660 tgttttcagcttatttccataagctcttcataatagcttat 20512700  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 27123368 - 27123415
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttatcaaaacaa 286  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  27123368 tgttttcaacttatttccataagctctccataatagctta-caaaacaa 27123415  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 11264358 - 11264329
Alignment:
Q  235 aactgttttcaacttatttccataagctct 264  Q
    ||||||||||||||||||||||||||||||    
T  11264358 aactgttttcaacttatttccataagctct 11264329  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 12792706 - 12792756
Alignment:
Q  235 aactgttttcaacttatttccataagctctgcataataacttatcaaaaca 285  Q
    ||||||||||| ||||||||| |||||||| || |||| ||||||||||||    
T  12792706 aactgttttcagcttatttccgtaagctcttcagaatagcttatcaaaaca 12792756  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 28165155 - 28165105
Alignment:
Q  229 gttcataa-ctgttttcaacttatttccataagctctgcataataacttat 278  Q
    |||||||| |||||||||||||||||||||||||||| ||| ||| |||||    
T  28165155 gttcataagctgttttcaacttatttccataagctctccatgatagcttat 28165105  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 43205366 - 43205316
Alignment:
Q  235 aactgttttcaacttatttccataagctctgcataataacttatcaaaaca 285  Q
    |||||||||||||||||||||||||||||| | | ||| ||||| ||||||    
T  43205366 aactgttttcaacttatttccataagctctccgtgatagcttatgaaaaca 43205316  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 37034076 - 37034031
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttatcaaaa 283  Q
    ||||||||||||||||| ||||||||| ||||||| ||||| ||||    
T  37034076 tgttttcaacttatttctataagctctccataatatcttatgaaaa 37034031  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 1939347 - 1939395
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaaca 285  Q
    |||||||||||||||||||||||||||| ||  ||| ||||| ||||||    
T  1939347 ctgttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 43065466 - 43065518
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttatcaaaacaacttt 290  Q
    |||||||| |||||||| ||||||||| ||  ||||||||| |||||||||||    
T  43065466 tgttttcagcttatttcaataagctctccacgataacttatgaaaacaacttt 43065518  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 11795147 - 11795106
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttat 278  Q
    ||||||||| |||||||||||||||||| ||||||| |||||    
T  11795147 ctgttttcagcttatttccataagctctccataatagcttat 11795106  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 12361247 - 12361199
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaaca 285  Q
    ||||||||||||||||||||| |||||| |  |||||||||| ||||||    
T  12361247 ctgttttcaacttatttccattagctctcctgaataacttatgaaaaca 12361199  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 15515593 - 15515544
Alignment:
Q  240 ttttcaacttatttccataagctctgcataataacttatcaaaacaactt 289  Q
    ||||||| ||||||||||||||| | ||| ||||||||| ||||||||||    
T  15515593 ttttcaatttatttccataagctatccatgataacttatgaaaacaactt 15515544  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 35179194 - 35179146
Alignment:
Q  237 ctgttttcaacttatttccataagctctgcataataacttatcaaaaca 285  Q
    ||||||||| ||||||| |||||| ||| ||||||||||||| ||||||    
T  35179194 ctgttttcagcttattttcataagttctccataataacttatgaaaaca 35179146  T

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Target: scaffold0089 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 33643 - 33683
Alignment:
Q  238 tgttttcaacttatttccataagctctgcataataacttat 278  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  33643 tgttttcagcttatttccataagctcttcataatagcttat 33683  T

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