View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_high_13 (Length: 250)
Name: NF18060_high_13
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_high_13 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 7036959 - 7036713
Alignment:
| Q |
4 |
atgtcgaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatttgctctattttaagattccttg |
103 |
Q |
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| T |
7036959 |
atgtctaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcatggacattttcaatctgctctattttaagattccttg |
7036860 |
T |
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| Q |
104 |
attggttttcccatatgactttatctttcccacgaagaaggttagctaatgctttaagaactagtggaacacctgcggtataatccaccattttctttga |
203 |
Q |
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| T |
7036859 |
attgggtttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatcaaccatattctttga |
7036760 |
T |
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| Q |
204 |
tagctcatagtactccatttcgagatgctcatgtttagtaaaggcgt |
250 |
Q |
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| T |
7036759 |
tagctaatagtactccatttcgagatgctcatgtttagtaaaggcgt |
7036713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 4 - 248
Target Start/End: Original strand, 7075003 - 7075247
Alignment:
| Q |
4 |
atgtcgaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatttgctctattttaagattccttg |
103 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7075003 |
atgtctaagaatatgatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatctgctctattttaagattccttg |
7075102 |
T |
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| Q |
104 |
attggttttcccatatgactttatctttcccacgaagaaggttagctaatgctttaagaactagtggaacacctgcggtataatccaccattttctttga |
203 |
Q |
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| T |
7075103 |
attggctttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatccaccattttctttga |
7075202 |
T |
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| Q |
204 |
tagctcatagtactccatttcgagatgctcatgtttagtaaaggc |
248 |
Q |
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| T |
7075203 |
tagcttatagtactccatttcaagatgcttttgtttattaaaggc |
7075247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 7031241 - 7031004
Alignment:
| Q |
13 |
aatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatttgctctattttaagattccttgattggtttt |
112 |
Q |
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|||||| ||||||||| | |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| ||| || ||| ||| ||| |
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| T |
7031241 |
aatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcctggcttt |
7031142 |
T |
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| Q |
113 |
cccatatgactttatctttcccacgaagaaggttagctaatgctttaagaactagtggaacacctgcggtataatccaccattttctttgatagctcata |
212 |
Q |
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| T |
7031141 |
cccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatagctcata |
7031042 |
T |
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| Q |
213 |
gtactccatttcgagatgctcatgtttagtaaaggcgt |
250 |
Q |
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| T |
7031041 |
gtactccatttcgagatgctcatgtttagtaaaggcgt |
7031004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 7023852 - 7023617
Alignment:
| Q |
13 |
aatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatttgctctattttaagattccttgattggtttt |
112 |
Q |
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|||||| ||||||||| |||||||||||||||||| ||||||||| | ||||| |||||| || | | ||| ||||||| | |||||||| | || ||| |
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| T |
7023852 |
aatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttgatattccttgctaggcttt |
7023753 |
T |
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| Q |
113 |
cccatatgactttatctttcccacgaagaaggttagctaatgctttaagaactagtggaacacctgcggtataatccaccattttctttgatagctcata |
212 |
Q |
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|||||||| ||||||||||||||| |||| ||| |||| | | |||||||| ||||||||||| | | | ||| ||||| ||| ||||||||| |
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| T |
7023752 |
cccatatggctttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatagctcacg |
7023653 |
T |
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| Q |
213 |
gtactccatttcgagatgctcatgtttagtaaaggc |
248 |
Q |
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| T |
7023652 |
gtactccatttcattatgcttatgtttagcaaaggc |
7023617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 4009673 - 4009720
Alignment:
| Q |
183 |
ataatccaccattttctttgatagctcatagtactccatttcgagatg |
230 |
Q |
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| T |
4009673 |
ataatcgaccactttctttgatagatcatagtactccatttcaagatg |
4009720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 3817287 - 3817320
Alignment:
| Q |
197 |
tctttgatagctcatagtactccatttcgagatg |
230 |
Q |
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| T |
3817287 |
tctttgatagctcatagtactccatttcaagatg |
3817320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 4001995 - 4002028
Alignment:
| Q |
197 |
tctttgatagctcatagtactccatttcgagatg |
230 |
Q |
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| T |
4001995 |
tctttgatagctcatagtactccatttcaagatg |
4002028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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