View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_high_5 (Length: 386)
Name: NF18060_high_5
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_high_5 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 1923692 - 1924049
Alignment:
| Q |
12 |
agcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgttaaagcaacaaaacatgatgaaaatccagctgaagaca |
111 |
Q |
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| T |
1923692 |
agcataggcatagcaaaagttggaagcagtgcctcaataggtgatcttcaagtagccattgttaaagcaacaaaacatgatgaaaatccagctgaagaaa |
1923791 |
T |
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| Q |
112 |
gacatattagagagattctaagcttaacatgttactcacgtgcattcataagttcttgtgtgaacacactctctaaacgtttgatcaagactagtagttg |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
1923792 |
gacacattagagagattctaagcttaacatgttactcacgagcattcataagttcttgtgtgaacacactctctaaacgtttgatcaagacaagcagttg |
1923891 |
T |
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| Q |
212 |
gacagttgctttaaaaacacttgttttgattcaaaggttgttggctgatggtgatcatgcttatgaacaagaaatattcttctcaactcaacgtggaact |
311 |
Q |
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| T |
1923892 |
gacagttgctttaaaaacacttgttttgattcaaaggttgttggctgatggtgatcgtgcttatgaacaagaaatattcttctcaactcaacgtggaact |
1923991 |
T |
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| Q |
312 |
cgactccttaacatgtctgattttagggacaagtctaagtctaattcatgggattatt |
369 |
Q |
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| T |
1923992 |
cgacttcttaacatgtctgattttagggacaagtctaagtctaattcatgggattatt |
1924049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 16241852 - 16241930
Alignment:
| Q |
94 |
aaaatccagctgaagacagacatattagagagattctaagcttaacatgttactcacgtgcattcataagttcttgtgt |
172 |
Q |
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| T |
16241852 |
aaaatccagctgaatagaaactcattagggagattctaagcttaacatgtaattcacatgcattcagtagtgcttgtgt |
16241930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 90 - 335
Target Start/End: Original strand, 1328447 - 1328692
Alignment:
| Q |
90 |
gatgaaaatccagctgaagacagacatattagagagattctaagcttaacatgttactcacgtgcattcataagttcttgtgtgaacacactctctaaac |
189 |
Q |
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|||||| |||| |||||||| | | |||| | |||||||| || |||||||||||||| || |||||||| ||| ||||||| || || ||||| | | |
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| T |
1328447 |
gatgaatatccggctgaagagaaatatatacgggagattctgagtttaacatgttactctcgcgcattcattagtgcttgtgttaataccctctcgaggc |
1328546 |
T |
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| Q |
190 |
gtttgatcaagactagtagttggacagttgctttaaaaacacttgttttgattcaaaggttgttggctgatggtgatcatgcttatgaacaagaaatatt |
289 |
Q |
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| T |
1328547 |
gtctcagcaagactaaaaattggacagtggctttgaaaactcttattttgattcaaaggcttctagaagaaggtgaccctgcttatgagcaagagatatt |
1328646 |
T |
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| Q |
290 |
cttctcaactcaacgtggaactcgactccttaacatgtctgatttt |
335 |
Q |
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| T |
1328647 |
cttctcaactcgacgtgggactcgccttctcaacatgtccgatttt |
1328692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 14923 - 15001
Alignment:
| Q |
94 |
aaaatccagctgaagacagacatattagagagattctaagcttaacatgttactcacgtgcattcataagttcttgtgt |
172 |
Q |
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| T |
14923 |
aaaatccagctgaatagaaactcattagggagattctaagcttaacatgtaattcacatgcattcagtagtgcttgtgt |
15001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 22013614 - 22013692
Alignment:
| Q |
94 |
aaaatccagctgaagacagacatattagagagattctaagcttaacatgttactcacgtgcattcataagttcttgtgt |
172 |
Q |
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| T |
22013614 |
aaaatccagctgaatagaaactcattagggagattctaagcttaacatgtaattcacatgcattcagtagtgcttgtgt |
22013692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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