View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18060_high_8 (Length: 341)
Name: NF18060_high_8
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 148 - 335
Target Start/End: Original strand, 9112362 - 9112548
Alignment:
| Q |
148 |
aacacattaaccactcaaaaaattcaaacatcacaataattttaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatccaca |
247 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||| | |||||||| ||||||||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
9112362 |
aacacattaaccacccaaaaaattcaaacaacataataactccaagtacaggaatttgcaatggatccaccacat-ccatgatcacaaattctatccaca |
9112460 |
T |
|
| Q |
248 |
tgaaatctccgctttcaatctcattcatccaattgccacaagatcactcaaataatagagcaacatggatcaaaaataaaaatcaatc |
335 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| || |||||| |||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9112461 |
tgaaatctccactctcaatctcattcatccaatggcgtcaagattactcaaatggtagggcaacatggatcaaaaatataaatcaatc |
9112548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 9111199 - 9111354
Alignment:
| Q |
96 |
agatgagttaaagatgtactactactttctaatttaagaagcataatgtgataacacattaaccactcaaaaaattcaaacatcacaataat---tttaa |
192 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | || |
|
|
| T |
9111199 |
agatgtgtcaaagatgtcctactactgtctaatttaagcagcataatgtgataacacattaaccactctaaaaattcaaacaacacaataataactccaa |
9111298 |
T |
|
| Q |
193 |
gtacagaaatttgcaatggatccaccacattccatgatctcaaactctatccacat |
248 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9111299 |
gtacagaaatttgcaatggatccgccacattccatgatctcaaactctatccacat |
9111354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 9112059 - 9112132
Alignment:
| Q |
250 |
aaatctccgctttcaat-ctcattcatccaattgccacaagatcactcaaataatagagcaacatggatcaaaa |
322 |
Q |
| |
|
|||||||| || ||||| |||||||||||| | |||||||||| |||| ||| ||||||||||||||| ||||| |
|
|
| T |
9112059 |
aaatctccactctcaattctcattcatccattcgccacaagattactctaatcatagagcaacatggaacaaaa |
9112132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 9129758 - 9129838
Alignment:
| Q |
247 |
atgaaatctccgctttcaatctcattcatccaattgccacaagatcactcaaataatagagcaacatggatcaaaaataaa |
327 |
Q |
| |
|
|||||||||| || |||||| ||||||||||| ||| ||||||||||||||| || || || ||||| ||| ||||||| |
|
|
| T |
9129758 |
atgaaatctctactctcaatcccattcatccaacggccgcaagatcactcaaatcatggaccagcatggctcacaaataaa |
9129838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 329
Target Start/End: Complemental strand, 4905417 - 4905238
Alignment:
| Q |
150 |
cacattaaccactcaaaaaattcaaacatcacaat----aattttaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatcca |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| || | | |||||||| ||| ||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
4905417 |
cacattaaccactcaaaaaatttaaacaacacaatcaataactcttagtacagacattaacaatgga----ccacattccatgatcccaaattctatcca |
4905322 |
T |
|
| Q |
246 |
catgaaatctccgctttcaatctcattcatccaattgccacaagatcactcaaataatagagcaacatggatcaaaaataaaaa |
329 |
Q |
| |
|
|||||||||||| | ||||| |||||| | || ||||||| |||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
4905321 |
catgaaatctccattctcaattccattcacctaacagccacaaactcactcaaatcatagagcaacatgggtcaaaaataaaaa |
4905238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 329
Target Start/End: Complemental strand, 4884210 - 4884009
Alignment:
| Q |
129 |
ttaagaagcataatgtgataacacattaaccactcaaaaaattcaaacat---ca--caataattttaagtacagaaatttgcaatggatccaccacatt |
223 |
Q |
| |
|
||||| ||||||| ||||||| ||||||| |||||||||||| ||||| || |||||| | ||| |||||| |||||||||||| ||||||| |
|
|
| T |
4884210 |
ttaagcagcataacgtgataatacattaatcactcaaaaaataaaaacagacacaatcaataactgtaactacagacatttgcaatgga----ccacatt |
4884115 |
T |
|
| Q |
224 |
ccatgatctcaaactctatccacatgaaatctccgctttcaatctcattcatccaattgccacaagatcactcaaataatagagcaacatggatcaaaaa |
323 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| || | ||||| |||||| | || ||||||| |||||||||| ||| |||||||||| ||||||| |
|
|
| T |
4884114 |
ccatgatcccaaattctatccacatgaaatccccattctcaattccattcacctaacagccacaaactcactcaaatcataaagcaacatgggtcaaaaa |
4884015 |
T |
|
| Q |
324 |
taaaaa |
329 |
Q |
| |
|
|||||| |
|
|
| T |
4884014 |
taaaaa |
4884009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 4924683 - 4924498
Alignment:
| Q |
150 |
cacattaaccactcaaaaaattcaaacatcacaat----aattttaagtacagaaatttgcaatggatccaccacattccatgatctcaaactctatcca |
245 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| || | | |||||||| ||| ||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
4924683 |
cacattaaccactcaaaaaatttaaacaacacaatcaataactcttagtacagacattaacaatgga----ccacattccatgatcccaaatactatcca |
4924588 |
T |
|
| Q |
246 |
catgaaatctccgctttcaatctcattcatccaattgccacaagatcactcaaataatagagcaacatggatcaaaaataaaaatcaatc |
335 |
Q |
| |
|
|||||||||||| | ||||| |||||| | || ||||||| |||||||||| |||||||||||||| |||||||||| || ||||| |
|
|
| T |
4924587 |
catgaaatctccattctcaattccattcacctaacagccacaaactcactcaaatcatagagcaacatgggtcaaaaataataagcaatc |
4924498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University