View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18060_low_1 (Length: 704)

Name: NF18060_low_1
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18060_low_1
NF18060_low_1
[»] chr1 (3 HSPs)
chr1 (318-689)||(5828268-5828641)
chr1 (1-109)||(5827867-5827975)
chr1 (162-224)||(5828109-5828171)
[»] chr2 (1 HSPs)
chr2 (444-565)||(6853441-6853560)
[»] chr8 (1 HSPs)
chr8 (505-558)||(32496026-32496079)
[»] chr6 (1 HSPs)
chr6 (514-544)||(31105937-31105967)
[»] chr7 (1 HSPs)
chr7 (383-416)||(6901177-6901210)
[»] chr3 (1 HSPs)
chr3 (522-550)||(29205581-29205609)


Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 318 - 689
Target Start/End: Original strand, 5828268 - 5828641
Alignment:
Q  318 aataaggagataatcaaccaaacagacaaatcaacagagtgagaatcaataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaat 417  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5828268 aataaagagataatcaaccaaacagacaaatcaacagagtgagaatcaataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaat 5828367  T
Q  418 caaacaatcaaccatagaaattgcattgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat 517  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828368 caaacaatcaaccatagaaattgcagtgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat 5828467  T
Q  518 atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828468 atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt 5828567  T
Q  618 cctttgtaattttct--gagttgtaaggctttgcagttttactagagaagttatatgagagagtttgcaatttt 689  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828568 cctttgtaattttctgagagttgtaaggctttgcagttttactagagaagttatatgagagagtttgcaatttt 5828641  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 5827867 - 5827975
Alignment:
Q  1 cataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataacttattatcttcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5827867 cataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataacttattatcttcata 5827966  T
Q  101 tttcccctg 109  Q
    |||||||||    
T  5827967 tttcccctg 5827975  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 5828109 - 5828171
Alignment:
Q  162 agagagagagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat 224  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828109 agagagtgagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat 5828171  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 565
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
Q  444 tgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac 543  Q
    ||||||||||| |||| |||||| || |||||||||| || |||||| |||| | || || | |||||| |||||  ||||||||||| | |||||||||    
T  6853560 tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac 6853463  T
Q  544 cataacatctctagtatcttgg 565  Q
    || |||||||||||| ||||||    
T  6853462 cacaacatctctagtctcttgg 6853441  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 505 - 558
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
Q  505 ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt 558  Q
    |||||||| ||||||||||||| ||||||||||||||||  |||| ||||||||    
T  32496079 ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt 32496026  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 544
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
Q  514 aaatatagagttatattgagttttcttcacc 544  Q
    |||||||||||||||||||||||||||||||    
T  31105937 aaatatagagttatattgagttttcttcacc 31105967  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 416
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
Q  383 agaagaagcaaccaaagagagaaatcaaaccaaa 416  Q
    ||||||||||||||||||| ||||||||||||||    
T  6901177 agaagaagcaaccaaagagtgaaatcaaaccaaa 6901210  T

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Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 522 - 550
Target Start/End: Complemental strand, 29205609 - 29205581
Alignment:
Q  522 agttatattgagttttcttcaccataaca 550  Q
    |||||||||||||||||||||||||||||    
T  29205609 agttatattgagttttcttcaccataaca 29205581  T

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