View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_low_10 (Length: 297)
Name: NF18060_low_10
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 59 - 279
Target Start/End: Complemental strand, 39272046 - 39271826
Alignment:
| Q |
59 |
actgttgaagttattgatattaacattttatcactttttcctttatctaatgtaacccttgtttttgtgaacttaactggacagatacatgtgccgcttg |
158 |
Q |
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| T |
39272046 |
actgttgaagttattgatattaacattttatcactttttcctttatctaatgtaacccttgtttttgtgaacttaactggacagatacatgtgccgcttg |
39271947 |
T |
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| Q |
159 |
acccgcctcagtggaccttggatccaagaaaattgcttacatcaattactgagagaactaaagccattatactgaataggttagaaattacacataaata |
258 |
Q |
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| T |
39271946 |
acccgcctcagtggaccttggatccaagaaaattgcttacatcaattactgagagaactaaagccattatactgaataggttagaaattacacataaata |
39271847 |
T |
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| Q |
259 |
atctcaaatgatttcatattt |
279 |
Q |
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| T |
39271846 |
atctcaaatgatttcatattt |
39271826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39272044 - 39272089
Alignment:
| Q |
1 |
agttaaagggacagcaaacatgcaggatcattggattgtacacagg |
46 |
Q |
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| T |
39272044 |
agttaaagggacagcaaacatgcaggatcattggattgtacacagg |
39272089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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