View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18060_low_13 (Length: 251)

Name: NF18060_low_13
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18060_low_13
NF18060_low_13
[»] chr3 (14 HSPs)
chr3 (1-212)||(52744666-52744875)
chr3 (13-72)||(35539696-35539755)
chr3 (11-105)||(36619233-36619326)
chr3 (1-86)||(13755099-13755184)
chr3 (1-86)||(13768500-13768585)
chr3 (1-104)||(46048958-46049062)
chr3 (11-102)||(40242141-40242232)
chr3 (2-104)||(45603382-45603484)
chr3 (22-72)||(46006046-46006096)
chr3 (11-75)||(44110934-44110998)
chr3 (1-85)||(49109004-49109088)
chr3 (11-60)||(26085176-26085225)
chr3 (4-61)||(52393759-52393816)
chr3 (13-65)||(55222604-55222656)
[»] chr2 (15 HSPs)
chr2 (1-97)||(11922025-11922121)
chr2 (14-86)||(3668931-3669003)
chr2 (13-85)||(9583235-9583307)
chr2 (1-65)||(31050055-31050119)
chr2 (11-86)||(15269289-15269364)
chr2 (11-84)||(26312565-26312638)
chr2 (23-104)||(34375122-34375203)
chr2 (14-82)||(6710831-6710899)
chr2 (1-61)||(16117858-16117918)
chr2 (40-96)||(30465344-30465400)
chr2 (13-101)||(37347795-37347883)
chr2 (13-84)||(14772884-14772955)
chr2 (2-56)||(6459201-6459255)
chr2 (13-83)||(11916028-11916098)
chr2 (1-65)||(36267096-36267160)
[»] chr5 (9 HSPs)
chr5 (13-104)||(41520820-41520911)
chr5 (45-104)||(35463217-35463277)
chr5 (1-72)||(2375654-2375719)
chr5 (14-82)||(8571950-8572018)
chr5 (14-85)||(1309722-1309793)
chr5 (11-82)||(12593222-12593293)
chr5 (11-93)||(8234236-8234318)
chr5 (13-78)||(11200495-11200560)
chr5 (13-61)||(31066260-31066308)
[»] chr4 (16 HSPs)
chr4 (1-86)||(35308931-35309016)
chr4 (13-85)||(2396392-2396464)
chr4 (1-84)||(10180560-10180643)
chr4 (14-65)||(23607467-23607518)
chr4 (14-85)||(35331943-35332014)
chr4 (14-104)||(42426850-42426940)
chr4 (11-104)||(12447493-12447585)
chr4 (14-63)||(8489456-8489505)
chr4 (13-78)||(39055262-39055327)
chr4 (11-59)||(28897710-28897758)
chr4 (16-64)||(45833962-45834010)
chr4 (42-96)||(822367-822421)
chr4 (14-96)||(35144470-35144552)
chr4 (46-104)||(53096599-53096657)
chr4 (17-85)||(23359195-23359263)
chr4 (13-85)||(52199896-52199968)
[»] chr8 (21 HSPs)
chr8 (13-105)||(13628995-13629087)
chr8 (13-105)||(13729407-13729499)
chr8 (11-96)||(36317053-36317138)
chr8 (40-104)||(38937867-38937931)
chr8 (13-104)||(6519002-6519093)
chr8 (14-65)||(18806528-18806579)
chr8 (11-105)||(7288296-7288390)
chr8 (13-83)||(31226428-31226498)
chr8 (4-53)||(42692701-42692750)
chr8 (42-86)||(2603060-2603104)
chr8 (13-105)||(9604460-9604552)
chr8 (1-72)||(13079889-13079960)
chr8 (25-80)||(37673727-37673782)
chr8 (14-72)||(35973345-35973403)
chr8 (3-60)||(14426069-14426126)
chr8 (35-84)||(28557341-28557390)
chr8 (16-85)||(31128518-31128587)
chr8 (13-86)||(35468425-35468497)
chr8 (28-96)||(1155110-1155178)
chr8 (11-67)||(4797189-4797245)
chr8 (13-85)||(9135095-9135166)
[»] chr6 (8 HSPs)
chr6 (13-85)||(33755833-33755905)
chr6 (1-96)||(7693868-7693964)
chr6 (13-72)||(32658384-32658443)
chr6 (25-86)||(3543292-3543353)
chr6 (21-102)||(31743527-31743608)
chr6 (13-65)||(387839-387891)
chr6 (25-88)||(3705690-3705753)
chr6 (11-96)||(32977328-32977414)
[»] chr1 (14 HSPs)
chr1 (2-96)||(27544454-27544548)
chr1 (13-101)||(51504491-51504579)
chr1 (13-81)||(38902061-38902129)
chr1 (11-86)||(52353745-52353820)
chr1 (13-85)||(32451717-32451789)
chr1 (1-84)||(36166986-36167068)
chr1 (13-84)||(43822870-43822941)
chr1 (11-65)||(15726900-15726954)
chr1 (11-61)||(33326186-33326236)
chr1 (11-65)||(47364436-47364489)
chr1 (44-85)||(13984131-13984172)
chr1 (23-72)||(42831752-42831801)
chr1 (13-61)||(47783612-47783660)
chr1 (1-85)||(49003311-49003394)
[»] chr7 (12 HSPs)
chr7 (11-96)||(38224060-38224145)
chr7 (14-86)||(46747992-46748064)
chr7 (19-85)||(43302083-43302149)
chr7 (11-104)||(47841378-47841471)
chr7 (1-99)||(4958321-4958419)
chr7 (14-84)||(30859666-30859736)
chr7 (35-100)||(31330473-31330538)
chr7 (13-85)||(36657847-36657919)
chr7 (14-95)||(5513805-5513887)
chr7 (44-104)||(19987234-19987294)
chr7 (40-72)||(27334478-27334510)
chr7 (2-86)||(36656556-36656640)
[»] scaffold0036 (1 HSPs)
scaffold0036 (2-85)||(63644-63727)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52744666 - 52744875
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacat 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  52744666 cattttttactacttaaatgagtctcacgtgtacacattacttatttataattttttaatagtaacacctaacaagtactcaatcctttcaacccaacat 52744765  T
Q  101 ctcatttataatagtctccttacgatatgtgtgtgcgtgttattttcaacactaactttaattacttaaaattatctagttgtctgatcttcaattgata 200  Q
     |||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  52744766 ttcatttataataatctccttacgata--tgtgtgcgtgttattttcaacactaactttaattgcttaaaattatctagttgtgtgatcttcaattgata 52744863  T
Q  201 tttatatacata 212  Q
    ||||||||||||    
T  52744864 tttatatacata 52744875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 35539755 - 35539696
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||||    
T  35539755 cttaaatgagtctcacgtgtacacatcatttatttataattttttaatagtagtacctaa 35539696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 36619326 - 36619233
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctcat 105  Q
    |||||||||| |||||||||||| |||| ||| |||||||||||||||||||||  | |||| ||||| |||||||   ||||||||||||||||    
T  36619326 tacttaaatgggtctcacgtgtacacatcactgatttataattttttaatagta-tatctaataagtattcaatccccccaacccaacatctcat 36619233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 13755099 - 13755184
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    ||||||||| |||||||| | ||| |||||||| |||| ||| |||||||||||||||||||||| || ||| ||| |||||||||    
T  13755099 cattttttagtacttaaacgggtcccacgtgtacacatcactcatttataattttttaatagtagtacttaataagaactcaatcc 13755184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 13768500 - 13768585
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    ||||||||| |||||||| | ||| |||||||| |||| ||| |||||||||||||||||||||| || ||| ||| |||||||||    
T  13768500 cattttttagtacttaaacgggtcccacgtgtacacatcactcatttataattttttaatagtagtacttaataagaactcaatcc 13768585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 46049062 - 46048958
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataatt-ttttaatagtagcacctaacaagtactcaatcctttcaacccaaca 99  Q
    ||||||| | |||||||||| ||||||| ||||||||||||| |||||||||| |||||||| ||| |||||| |||||  |||||| | |||| || ||    
T  46049062 catttttaagtacttaaatgggtctcacatgtaaacattactcatttataatttttttaatattagtacctaataagtatccaatccctccaactcagca 46048963  T
Q  100 tctca 104  Q
    |||||    
T  46048962 tctca 46048958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 40242141 - 40242232
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatct 102  Q
    |||| ||||| |||||||||||| | || |||||||||||||||||||||||||  |||||| ||| ||||||| |||  || |||||||||    
T  40242141 tactcaaatgtgtctcacgtgtatatatcacttatttataattttttaatagtaatacctaataagcactcaattcttctaaaccaacatct 40242232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 45603382 - 45603484
Alignment:
Q  2 attttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatc 101  Q
    |||||||  |||||||||||||||||||| || |||| | | |||||||||||| ||||| ||| || ||| ||  ||||||||| || || ||||||||    
T  45603382 attttttggtacttaaatgagtctcacgtatacacatcattcatttataattttataataatagtacttaataaacactcaatcccttaaatccaacatc 45603481  T
Q  102 tca 104  Q
    |||    
T  45603482 tca 45603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 46006046 - 46006096
Alignment:
Q  22 gtctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    |||||||||||| |||| ||| |||||||||||||||||||||| ||||||    
T  46006046 gtctcacgtgtacacatcactcatttataattttttaatagtagtacctaa 46006096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 44110998 - 44110934
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaa 75  Q
    |||||||||| ||| |||||||| |||| | | |||||||||||||||||||||  |||||||||    
T  44110998 tacttaaatgggtcacacgtgtacacataattcatttataattttttaatagtattacctaacaa 44110934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 49109004 - 49109088
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    ||||||||  ||| ||||||||||||||| ||| | |||| |||||||||| |||| | |||||| |||||| ||| ||||||||    
T  49109004 catttttttttacgtaaatgagtctcacgcgtacaaattatttatttataacttttcattagtagtacctaataagcactcaatc 49109088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 26085225 - 26085176
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaat 60  Q
    |||||||||| |||||||||||| |||| | | |||||||||||||||||    
T  26085225 tacttaaatgggtctcacgtgtacacatcattcatttataattttttaat 26085176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 52393816 - 52393759
Alignment:
Q  4 tttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaata 61  Q
    |||||| || |||||||||| ||||||| | |||| | ||||||||||||||||||||    
T  52393816 tttttagtatttaaatgagtatcacgtgcatacatcatttatttataattttttaata 52393759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 55222656 - 55222604
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    |||||||| |||||||||||| | || | | ||||||||||||||||||||||    
T  55222656 cttaaatgggtctcacgtgtacatatcagtcatttataattttttaatagtag 55222604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11922121 - 11922025
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaa 97  Q
    ||||||| | |||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||||||| | | ||||||||    
T  11922121 catttttaattacttaaatgggtctcacgtgtacacattactcatttataattttttaatagtagtacctaaaaagcactcaattcctccaacccaa 11922025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 3669003 - 3668931
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||| |  ||| |||||||||||||    
T  3669003 ttaaatgagtctcacgtgtatatattactaatttataattttttaatagtagtaattaataagtactcaatcc 3668931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 9583307 - 9583235
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||||| | |||| ||| ||||||||    
T  9583307 cttaaatgagtctcacgtgtacgcatcacttatttataattttttaatagtagtatctaataagcactcaatc 9583235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31050055 - 31050119
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    ||||||| | |||||||||||||||||| |||| |||| ||||||||||||||||||||||||||    
T  31050055 catttttgagtacttaaatgagtctcacatgtacacatcacttatttataattttttaatagtag 31050119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 15269364 - 15269289
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    |||||||||| ||||||| |||| |||||||| ||||||||||||||||||||||  ||||| ||||| |||||||    
T  15269364 tacttaaatgggtctcacatgtacacattactcatttataattttttaatagtagtgcctaataagtattcaatcc 15269289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 26312638 - 26312565
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    |||||||| | ||| |||||||| |||| ||| |||||||||||||||||||||| |||||| ||| |||||||    
T  26312638 tacttaaacgggtcacacgtgtacacatcactcatttataattttttaatagtagtacctaataagcactcaat 26312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 34375203 - 34375122
Alignment:
Q  23 tctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||| |||| |||| |||||||||||||||||||||||||| |||||| ||| | ||||||| | ||||| || ||||||    
T  34375203 tctcacatgtacacatcacttatttataattttttaatagtagtacctaataagaattcaatccctccaacctaagatctca 34375122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 6710831 - 6710899
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactca 82  Q
    ||||||| |||||||||||| | || ||| |||||||||||||||||||||| | |||| ||| |||||    
T  6710831 ttaaatgggtctcacgtgtacagatcactcatttataattttttaatagtagtatctaataagcactca 6710899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16117858 - 16117918
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaata 61  Q
    ||||||||| || ||||||| |||||||||||| | || ||| ||||||||||||||||||    
T  16117858 cattttttagtatttaaatgggtctcacgtgtacatatcactcatttataattttttaata 16117918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 30465400 - 30465344
Alignment:
Q  40 acttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    |||||||||||||||||||||||||| | |||| ||| | ||||||| |||||||||    
T  30465400 acttatttataattttttaatagtagtatctaataagaattcaatcccttcaaccca 30465344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 37347795 - 37347883
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatc 101  Q
    ||||||||  ||||||||||| |||| | |||||||||||||||||||||||  | |||| ||| | ||||||| | ||||||| ||||    
T  37347795 cttaaatggatctcacgtgtacacatcatttatttataattttttaatagtaatatctaataagaattcaatccctccaacccagcatc 37347883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 14772884 - 14772955
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    |||||||| |||||||| ||| |||| | | |||||||||||||||| | ||| |||||| |||||||||||    
T  14772884 cttaaatgggtctcacgcgtacacatcattcatttataattttttaacaatagtacctaataagtactcaat 14772955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 6459255 - 6459201
Alignment:
Q  2 attttttactacttaaatgagtctcacgtgtaaacattacttatttataattttt 56  Q
    |||||||  ||||||||||||||||| ||||| |||| ||| |||||||||||||    
T  6459255 attttttgatacttaaatgagtctcatgtgtacacatcactgatttataattttt 6459201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 11916098 - 11916028
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaa 83  Q
    |||||| | ||||||| || | ||||||||| ||||||||||||||||| ||| |||||| | ||||||||    
T  11916098 cttaaaggggtctcacatggacacattacttttttataattttttaataatagtacctaataggtactcaa 11916028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36267160 - 36267096
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    ||||||||  ||||||| |  ||| |||||||| |||| ||| ||||||||||||||||||||||    
T  36267160 cattttttgttacttaacttggtcgcacgtgtacacatcactcatttataattttttaatagtag 36267096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 41520820 - 41520911
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||| || ||||||||| |||| |||||||||||||||||||||||| | |||||| ||| ||||||||| | ||||||| |||||||    
T  41520820 cttaaatgggtttcacgtgtacacatcacttatttataattttttaatagtggtacctaataagaactcaatccctccaacccagcatctca 41520911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 35463217 - 35463277
Alignment:
Q  45 tttataattttttaatagtagcacctaacaagtactcaatcctttc-aacccaacatctca 104  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  35463217 tttataattttttaatagtagtacctaataagtactcaatcctttcaaacccaacatctca 35463277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 2375719 - 2375654
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    ||||||||| | |||||||||||||||||||| |      ||||||||||||||||||||||||| ||||||    
T  2375719 cattttttagttcttaaatgagtctcacgtgtca------cttatttataattttttaatagtagtacctaa 2375654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 8571950 - 8572018
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactca 82  Q
    ||||||| |||||||||||| |||| | ||||||||||||||||||||  || | |||||||| |||||    
T  8571950 ttaaatgggtctcacgtgtacacatgaattatttataattttttaatacgagtatctaacaagcactca 8572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 1309722 - 1309793
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    ||||||||||| |||||||| | || | |||||||||||||||||||| ||| | |||| ||| ||||||||    
T  1309722 ttaaatgagtcccacgtgtatatatcatttatttataattttttaataatagtatctaataagcactcaatc 1309793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 12593293 - 12593222
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactca 82  Q
    |||||||||  ||| |||||||| |||| ||| |||||||| ||||||||||||| | |||| |||||||||    
T  12593293 tacttaaattggtcacacgtgtacacatcactcatttataactttttaatagtagtatctaataagtactca 12593222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 8234318 - 8234236
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaac 93  Q
    |||||| ||||||||||| |||| |  ||| | |||||||||||||||||||||  | |||| |||| ||||||| |||||||    
T  8234318 tacttacatgagtctcacttgtataggttattcatttataattttttaatagtaatatctaataagttctcaatcttttcaac 8234236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 11200560 - 11200495
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagta 78  Q
    |||||||||| |||||| ||| |||| ||| |||||||||||||||||| ||  |||||| |||||    
T  11200560 cttaaatgagactcacgcgtacacatcactcatttataattttttaataataatacctaataagta 11200495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 31066260 - 31066308
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaata 61  Q
    ||||||||||| | || |||| |||||| ||||||||||||||||||||    
T  31066260 cttaaatgagtttgacatgtacacattatttatttataattttttaata 31066308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35308931 - 35309016
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    ||||||| | ||||||||||||||||||| ||| || | |||||||||||||||||||||||||  | |||| |||||||||||||    
T  35308931 catttttgaatacttaaatgagtctcacgcgtacacgtcacttatttataattttttaatagtaatatctaataagtactcaatcc 35309016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 2396464 - 2396392
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||||||| |||||||| |||| ||||||||||||||| |||||||||| |||||| ||| ||||||||    
T  2396464 cttaaatgagtcccacgtgtacacatcacttatttataatttgttaatagtagtacctaataagaactcaatc 2396392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10180560 - 10180643
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    ||||||| | ||||||||||  ||||||||||| | || ||| |||||||||||||||||||||| |||||| ||| |||||||    
T  10180560 catttttaagtacttaaatggatctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagaactcaat 10180643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 23607518 - 23607467
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||||    
T  23607518 ttaaatgggtctcacgtatacacattacttatttataattttttaatagtag 23607467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 35331943 - 35332014
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    ||||||||||| ||||| || |||||||||||||||| |||||||||||||| || ||| ||| ||||||||    
T  35331943 ttaaatgagtcccacgtatacacattacttatttatacttttttaatagtagtacataataagcactcaatc 35332014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 42426850 - 42426940
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||  ||||||||||| || |||||||||||||||||||||||||||| | |||| ||  ||||||||| | ||||| || ||||||    
T  42426850 ttaaatggatctcacgtgtacacgttacttatttataattttttaatagtagtatctaataaaaactcaatccctccaacctaatatctca 42426940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 12447585 - 12447493
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||||| |||||||| ||| | || ||||||||||||||||||||||||||    ||| ||| |||||||||||| |||||| |||||||    
T  12447585 tacttaaatg-gtctcacgagtacaaatcacttatttataattttttaatagtagtctataataagaactcaatccttttaacccagcatctca 12447493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 8489456 - 8489505
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagt 63  Q
    ||||||| |||| ||||||| |||| ||||||||||||||||||||||||    
T  8489456 ttaaatgggtcttacgtgtatacatcacttatttataattttttaatagt 8489505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 39055327 - 39055262
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagta 78  Q
    |||||||| |||||||| ||| |||| ||| |||||||||||||||||| ||| |||||| |||||    
T  39055327 cttaaatgggtctcacgcgtacacatcactcatttataattttttaatattagtacctaataagta 39055262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 28897758 - 28897710
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaa 59  Q
    ||||||||||||||||||||||| | || ||| ||||||||||||||||    
T  28897758 tacttaaatgagtctcacgtgtatatatcactcatttataattttttaa 28897710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 45834010 - 45833962
Alignment:
Q  16 aaatgagtctcacgtgtaaacattacttatttataattttttaatagta 64  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||||||    
T  45834010 aaatgggtctcacgtgtacacatcactcatttataattttttaatagta 45833962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 822367 - 822421
Alignment:
Q  42 ttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    ||||||||| |||||||||||||| | |||| ||||||||||||| | |||||||    
T  822367 ttatttatagttttttaatagtagtatctaataagtactcaatccctccaaccca 822421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 35144552 - 35144470
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    ||||||| |||||||||||| | || | ||||||||||||||||| |||||| | |||| ||| | ||||||| | |||||||    
T  35144552 ttaaatgggtctcacgtgtacatatcaattatttataattttttagtagtagtatctaataagcattcaatccctccaaccca 35144470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 53096599 - 53096657
Alignment:
Q  46 ttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||||||||||||||  || ||| ||| ||||||||| || ||||||||||||||    
T  53096599 ttataattttttaatagtaatacttaataagaactcaatccctttaacccaacatctca 53096657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 23359263 - 23359195
Alignment:
Q  17 aatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||||||| | || |||| | | |||||||||||||||||||||| | |||| ||| ||||||||    
T  23359263 aatgagtctcacatatacacatcattcatttataattttttaatagtagtatctaataagcactcaatc 23359195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 52199968 - 52199896
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||| ||| |||||| | || | ||| |||||||||||||||||||||| |||||| ||| | ||||||    
T  52199968 cttaaatgggtcccacgtgcacacgtcactcatttataattttttaatagtagtacctaataagcattcaatc 52199896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 13628995 - 13629087
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctcat 105  Q
    |||||||| ||||||| |||| |||| | | |||||||||||||||||||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  13628995 cttaaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcat 13629087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 13729407 - 13729499
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctcat 105  Q
    |||||||| ||||||| |||| |||| | | |||||||||||||||||||||| | |||| ||||| ||||||| | ||||||||||||||||    
T  13729407 cttaaatgggtctcacatgtacacatcattcatttataattttttaatagtagtatctaataagtagtcaatccctccaacccaacatctcat 13729499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 36317138 - 36317053
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    ||||||||||||||||||||||| |||| | |||||||||||| || ||| |||| |||||| ||| | || ||| ||||||||||    
T  36317138 tacttaaatgagtctcacgtgtacacatcatttatttataattattcaatcgtagtacctaataagcaatcgatcttttcaaccca 36317053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 38937931 - 38937867
Alignment:
Q  40 acttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    ||||||||||||||||||||||||  ||||||| ||| ||||||||| | |||| ||||||||||    
T  38937931 acttatttataattttttaatagtgacacctaataagaactcaatccctccaacacaacatctca 38937867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 6519002 - 6519093
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||| ||| |||||| | | || |||||||||||||||||||||||||| |||||| ||| | ||||||  | ||||||| |||||||    
T  6519002 cttaaatgggtcccacgtgcacatatcacttatttataattttttaatagtagtacctaataagaattcaatctctccaacccagcatctca 6519093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 18806528 - 18806579
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    ||||||| || ||||||||| |||| ||||||||||||||||||||||||||    
T  18806528 ttaaatgggtttcacgtgtacacatcacttatttataattttttaatagtag 18806579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 7288390 - 7288296
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctcat 105  Q
    ||||||||||||||||| || || | || |||||||||||||| ||| ||||||| | |||| ||| ||| ||||| | ||||||| ||||||||    
T  7288390 tacttaaatgagtctcatgtatagatatcacttatttataattgtttcatagtagtatctaataagaacttaatccctccaacccagcatctcat 7288296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 31226428 - 31226498
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaa 83  Q
    |||||||| || |||| |||| |||| ||| |||||||||||||||||||||| |||||| || |||||||    
T  31226428 cttaaatgggtgtcacatgtacacatcactcatttataattttttaatagtagtacctaataaatactcaa 31226498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 42692750 - 42692701
Alignment:
Q  4 tttttactacttaaatgagtctcacgtgtaaacattacttatttataatt 53  Q
    |||||| ||||||||||||||||||||||| |||| | ||||||||||||    
T  42692750 tttttagtacttaaatgagtctcacgtgtatacatcatttatttataatt 42692701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 2603060 - 2603104
Alignment:
Q  42 ttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    |||||||||||||||||||||||| | |||| |||||||||||||    
T  2603060 ttatttataattttttaatagtagtatctaataagtactcaatcc 2603104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 9604460 - 9604552
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctcat 105  Q
    |||||||  ||||||||| ||  ||| ||| |||||||||||||||||| ||| | |||| ||| ||||||||| | ||||||| ||||||||    
T  9604460 cttaaataggtctcacgtctacgcatcactaatttataattttttaataatagtatctaataagaactcaatccatccaacccagcatctcat 9604552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13079960 - 13079889
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    ||||||||  ||||||||| ||||||||||||| |  | ||| ||||||||||||| |||||||| ||||||    
T  13079960 cattttttgatacttaaataagtctcacgtgtacatttcactcatttataatttttgaatagtagtacctaa 13079889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 37673727 - 37673782
Alignment:
Q  25 tcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtact 80  Q
    ||||| ||| |||| ||| |||||||||||||||||||||| |||||| |||||||    
T  37673727 tcacgcgtacacatcactcatttataattttttaatagtagtacctaataagtact 37673782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 35973345 - 35973403
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    |||||| ||| ||| ||||| | ||||||||||||||||||||||||||| | ||||||    
T  35973345 ttaaataagtttcatgtgtacagattacttatttataattttttaatagttgtacctaa 35973403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 14426069 - 14426126
Alignment:
Q  3 ttttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaat 60  Q
    ||||||| | |||||||| ||| |||||||| |||| |||| ||||||||||||||||    
T  14426069 ttttttagttcttaaatgggtcacacgtgtacacatcacttctttataattttttaat 14426126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 28557390 - 28557341
Alignment:
Q  35 acattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    |||| ||| |||||||||||||||||||||| |||||| || ||||||||    
T  28557390 acatcactaatttataattttttaatagtagtacctaataactactcaat 28557341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 31128518 - 31128587
Alignment:
Q  16 aaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    ||||| ||||||||  || |||| ||| |||||||||||||||||||||| |||||| ||| | ||||||    
T  31128518 aaatgggtctcacgcatacacatcactcatttataattttttaatagtagtacctaataagcattcaatc 31128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 35468497 - 35468425
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    |||||||| |||||||| ||| |||| ||| ||||||||| ||||||||| || || ||| |||||||||||||    
T  35468497 cttaaatgggtctcacgcgtacacatcactcatttataat-ttttaatagcagtacttaataagtactcaatcc 35468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 1155110 - 1155178
Alignment:
Q  28 cgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    |||||| |||| ||| |||||||||||||||||||||| | |||| ||| | ||||||| | |||||||    
T  1155110 cgtgtacacatcactcatttataattttttaatagtagtatctaataagcattcaatccctccaaccca 1155178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 4797189 - 4797245
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagca 67  Q
    ||||||||||  |||||||||||   || ||| ||||||||||||||||||||||||    
T  4797189 tacttaaatggatctcacgtgtacgtatcactaatttataattttttaatagtagca 4797245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 9135166 - 9135095
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||| |||||||||||| | || ||| ||||| ||||||| |||||||| |||||| ||| ||||||||    
T  9135166 cttaaatgggtctcacgtgtacatatcactcatttacaattttt-aatagtagtacctaataagcactcaatc 9135095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 33755905 - 33755833
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||| |||||| ||||| ||||||||||||||| ||||||||||||||| |||||| ||||| ||||||    
T  33755905 cttaaatgggtctcaagtgtatacattacttatttattattttttaatagtagtacctaataagtattcaatc 33755833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 7693868 - 7693964
Alignment:
Q  1 cattttttactacttaaat-gagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    |||||| || ||||||||| | ||||||||| || |||| ||| ||||||||||||||| || ||| |||||| ||||||||||||| | |||||||    
T  7693868 cattttctaatacttaaattgggtctcacgtatacacatcactcatttataattttttagtaatagtacctaataagtactcaatccctccaaccca 7693964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 32658384 - 32658443
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    |||||||| |||||||||| | |||| ||| |||||||||||||||||||||| ||||||    
T  32658384 cttaaatgggtctcacgtggacacatcactcatttataattttttaatagtagtacctaa 32658443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 3543353 - 3543292
Alignment:
Q  25 tcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    ||||||||| |||||||| |||||||| ||||||||||||  | |||||||||||| |||||    
T  3543353 tcacgtgtacacattactcatttataaatttttaatagtattatctaacaagtacttaatcc 3543292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 31743527 - 31743608
Alignment:
Q  21 agtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatct 102  Q
    |||||| |||||| |||| | | ||||||||| |||||||||||| | |||| ||| ||||||||| ||||||| |||||||    
T  31743527 agtctcgcgtgtatacataattcatttataatattttaatagtagtatctaataagaactcaatcccttcaaccgaacatct 31743608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 387891 - 387839
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    |||||||||||| ||| |||| |||| ||| ||||||||||||||||||||||    
T  387891 cttaaatgagtcccacatgtacacataactcatttataattttttaatagtag 387839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 3705690 - 3705753
Alignment:
Q  25 tcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctt 88  Q
    ||||| ||| |||| ||||||||  |||||||||||||||| |||||| ||||| |||||||||    
T  3705690 tcacgcgtacacatcacttatttggaattttttaatagtagtacctaataagtattcaatcctt 3705753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 32977328 - 32977414
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataatttt-ttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    |||||||||| ||| |||| ||| |||| ||| |||||| ||||| |||||||||| |||||| ||| ||||||||| | |||||||    
T  32977328 tacttaaatgggtcccacgcgtacacatcactcatttatgatttttttaatagtagtacctaataagcactcaatccctccaaccca 32977414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 27544548 - 27544454
Alignment:
Q  2 attttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    |||||||  |||||||||| |||||| ||||| |||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||| | |||||||    
T  27544548 attttttggtacttaaatgggtctcatgtgtacacatcactcatttataattttttaataatagcatctaataagcactcaatccctccaaccca 27544454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 51504491 - 51504579
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatc 101  Q
    |||||||| |||||||||||| |||| ||| |||||||||||||||||||||| || ||  ||||||||||| | | ||||||| ||||    
T  51504491 cttaaatgggtctcacgtgtatacatcactcatttataattttttaatagtagtacgtattaagtactcaattcctccaacccatcatc 51504579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 38902129 - 38902061
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactc 81  Q
    |||||||| |||||||||||| | || ||| |||||||||||||||||||||| |||||| ||| ||||    
T  38902129 cttaaatgggtctcacgtgtacatatcactcatttataattttttaatagtagtacctaataagcactc 38902061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 52353745 - 52353820
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    |||||||||| ||| |||||||| |||| ||| ||||||||||||||||||| || |||||| ||| |||| ||||    
T  52353745 tacttaaatgggtcccacgtgtacacatcactaatttataattttttaatagcagtacctaataagcactcgatcc 52353820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 32451717 - 32451789
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||| ||||||||| || |||| ||| |||||||||||||||||||||  |||||| ||| | ||||||    
T  32451717 cttaaatgggtctcacgtttacacatcactaatttataattttttaatagtaatacctaataagcattcaatc 32451789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36167068 - 36166986
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    ||||||||| | |||||||| ||| ||| |||| |||| | ||||||||||||||||||| |||| |||||| || ||||||||    
T  36167068 cattttttagttcttaaatgggtcccacatgtacacatcatttatttataattttttaat-gtagtacctaataattactcaat 36166986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 43822941 - 43822870
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    |||||||| ||| |||| ||| |||| ||| |||||||||||||||||||||| | |||| ||| |||||||    
T  43822941 cttaaatgggtcccacgcgtacacatcactcatttataattttttaatagtagtatctaataagcactcaat 43822870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 15726900 - 15726954
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    ||||||||||| ||||||| ||  |||| | ||||||||||||||||||||||||    
T  15726900 tacttaaatgaatctcacgcgtgcacataatttatttataattttttaatagtag 15726954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 33326186 - 33326236
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaata 61  Q
    |||||||||||||| |||||||  |||| ||| ||||||||||||||||||    
T  33326186 tacttaaatgagtcacacgtgtgcacatcactcatttataattttttaata 33326236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 47364489 - 47364436
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtag 65  Q
    |||||||||| |||||||||||  |||||||| ||||||||||||| ||||||||    
T  47364489 tacttaaatg-gtctcacgtgttcacattactcatttataatttttaaatagtag 47364436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 13984172 - 13984131
Alignment:
Q  44 atttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||||||||||||||||| | |||| ||||||||||||    
T  13984172 atttataattttttaatagtagtatctaataagtactcaatc 13984131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 42831801 - 42831752
Alignment:
Q  23 tctcacgtgtaaacattacttatttataattttttaatagtagcacctaa 72  Q
    |||||| |||| | |||||| |||||||||||||||||||||| ||||||    
T  42831801 tctcacatgtacatattactcatttataattttttaatagtagtacctaa 42831752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 47783612 - 47783660
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaata 61  Q
    |||||||| |||||||||||| |||| | || |||||||||||||||||    
T  47783612 cttaaatgggtctcacgtgtacacatcatttgtttataattttttaata 47783660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 49003311 - 49003394
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    ||||||| | || ||||||  ||||||| |||| ||||||||  ||||||||||||||||||||  |||||| ||||| ||||||    
T  49003311 catttttgaatatttaaataggtctcacatgtacacattactc-tttataattttttaatagtaatacctaataagtattcaatc 49003394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 38224145 - 38224060
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaaccca 96  Q
    |||||||||||||||||  |||| |||| | ||||||| |||||||| || |||| |||||| ||||||||||||| |||||||||    
T  38224145 tacttaaatgagtctcatatgtacacatgatttatttagaattttttgatggtagtacctaataagtactcaatcccttcaaccca 38224060  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 46747992 - 46748064
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    ||||||| ||| ||| | || |||| ||||||||||||||||||||||||||||||||| ||| |||||||||    
T  46747992 ttaaatgggtcccacttatacacatcacttatttataattttttaatagtagcacctaataagaactcaatcc 46748064  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 43302083 - 43302149
Alignment:
Q  19 tgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||||| |||| |||| ||| |||||||||||||||||||||| |||||| || |||||||||    
T  43302083 tgagtctcacctgtacacataactcatttataattttttaatagtagtacctaataaatactcaatc 43302149  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 47841378 - 47841471
Alignment:
Q  11 tacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||||||||| ||| |||| |||| ||| |||||||||||| ||||||||| |  ||| ||||||||||||| | ||||| | |||||||    
T  47841378 tacttaaatgagtcccacatgtacacataactcatttataattttgtaatagtagtatttaataagtactcaatccctccaaccaagcatctca 47841471  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 4958419 - 4958321
Alignment:
Q  1 cattttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaaca 99  Q
    ||||||||| || |||||||||||  ||||||| |||| | | |||||||||||||||||||||| | |||| ||  ||||||||| | ||||| ||||    
T  4958419 cattttttagtatttaaatgagtcctacgtgtacacatcattcatttataattttttaatagtagtatctaataaacactcaatccctccaaccgaaca 4958321  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 30859736 - 30859666
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaat 84  Q
    ||||||| |||| ||||||| | || ||| |||||||||||||||||||||| ||| || |||||||||||    
T  30859736 ttaaatgggtcttacgtgtatatatcactcatttataattttttaatagtagtacccaataagtactcaat 30859666  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 31330538 - 31330473
Alignment:
Q  35 acattacttatttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacat 100  Q
    |||| ||| ||||||||||||||||| |||| |||||| ||| ||||||||| | |||||||||||    
T  31330538 acatcactcatttataattttttaatggtagtacctaataagcactcaatccctccaacccaacat 31330473  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 36657847 - 36657919
Alignment:
Q  13 cttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||| |||||| ||||| ||||| || |||||||||||||||||||||  | |||| ||| ||||||||    
T  36657847 cttaaatgggtctcatgtgtacacattgctcatttataattttttaatagtactatctaataagcactcaatc 36657919  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 5513805 - 5513887
Alignment:
Q  14 ttaaatgagtctcacgtgtaaacattacttatttataa-ttttttaatagtagcacctaacaagtactcaatcctttcaaccc 95  Q
    |||||||  ||||||||||| |||| |||||||||||| |||||||||||||  | |||| |||| |||||||| | ||||||    
T  5513805 ttaaatggatctcacgtgtacacatcacttatttataatttttttaatagtaatatctaataagttctcaatccctccaaccc 5513887  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 19987294 - 19987234
Alignment:
Q  44 atttataattttttaatagtagcacctaacaagtactcaatcctttcaacccaacatctca 104  Q
    |||||||||||||||||||||| || ||| ||||||   |||| | |||||||||||||||    
T  19987294 atttataattttttaatagtagtacataataagtacatgatccctccaacccaacatctca 19987234  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 27334510 - 27334478
Alignment:
Q  40 acttatttataattttttaatagtagcacctaa 72  Q
    |||||||||||||||||||||||||| ||||||    
T  27334510 acttatttataattttttaatagtagtacctaa 27334478  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 36656556 - 36656640
Alignment:
Q  2 attttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatcc 86  Q
    |||||||  |||||||||| ||||||| | || | || ||| |||||||||||||||||||| | | |||| || ||||||||||    
T  36656556 attttttggtacttaaatgggtctcacttatatatatcactcatttataattttttaatagtggtatctaataaatactcaatcc 36656640  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 63727 - 63644
Alignment:
Q  2 attttttactacttaaatgagtctcacgtgtaaacattacttatttataattttttaatagtagcacctaacaagtactcaatc 85  Q
    |||||||  |||||||||  |||||||||||| |  | ||| |||||||||||||||||||||| |||||| ||| ||||||||    
T  63727 attttttggtacttaaataggtctcacgtgtacatgtcactaatttataattttttaatagtagtacctaataaggactcaatc 63644  T

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