View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_low_15 (Length: 238)
Name: NF18060_low_15
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 52743494 - 52743670
Alignment:
| Q |
18 |
gatgtgtcctctactttaattttaatttagtggcatatgcattcgacaccagatgcaaccgcaaggtttcaatccggatcaac---taataataaattgg |
114 |
Q |
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| T |
52743494 |
gatgtgtcctctactttaattttaatttagtgggatatgcattcgacaccagatgcaaccgcaaggtttcaatccggatcaactaataataataaattgg |
52743593 |
T |
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| Q |
115 |
cctctagctagtttcggatactaattaaagtcatgaaagtttttccattagtttcgctaagtttatatggacattgt |
191 |
Q |
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| T |
52743594 |
cctctagctagtttcggatactaattaaagtcatgaaagtttttccatgagtttggccaagtttatatggacattgt |
52743670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 52744579 - 52744635
Alignment:
| Q |
182 |
tggacattgtataatatatgcaagagttcgagtttgaactccgaacatcccacttat |
238 |
Q |
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| T |
52744579 |
tggacattgtataatatatacaagggttcgagtttgaactccgaacatcccacttat |
52744635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 49189505 - 49189553
Alignment:
| Q |
185 |
acattgtataatatatgcaagagttcgagtttgaactccgaacatccca |
233 |
Q |
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| T |
49189505 |
acattgcataatataagcaagaattggagttcgaactccgaacatccca |
49189553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 32994408 - 32994472
Alignment:
| Q |
174 |
agtttatatggacattgtataatatatgcaagagttcgagtttgaactccgaacatcccacttat |
238 |
Q |
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| T |
32994408 |
agttgatatgaacattgcattatatatgtaggagttagagtttgaactccggacatcccacttat |
32994472 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 25626023 - 25626064
Alignment:
| Q |
164 |
agtttcgctaagtttatatggacattgtataatatatgcaag |
205 |
Q |
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| T |
25626023 |
agtttagcttagtttatatggacattgcataatatatgcaag |
25626064 |
T |
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