View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18060_low_2 (Length: 483)

Name: NF18060_low_2
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18060_low_2
NF18060_low_2
[»] chr1 (1 HSPs)
chr1 (16-469)||(6634942-6635395)
[»] chr3 (2 HSPs)
chr3 (19-464)||(52163840-52164285)
chr3 (88-195)||(42171780-42171887)
[»] chr5 (2 HSPs)
chr5 (19-294)||(15964178-15964453)
chr5 (13-383)||(7266243-7266613)
[»] chr8 (1 HSPs)
chr8 (21-281)||(33346586-33346846)
[»] chr6 (1 HSPs)
chr6 (78-188)||(2498498-2498608)
[»] chr4 (2 HSPs)
chr4 (78-188)||(27101086-27101196)
chr4 (66-196)||(48999158-48999288)
[»] chr7 (1 HSPs)
chr7 (99-188)||(44641041-44641130)


Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Original strand, 6634942 - 6635395
Alignment:
Q  16 aaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6634942 aaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactca 6635041  T
Q  116 ctggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgcaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6635042 ctggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgcaaa 6635141  T
Q  216 aacaagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctcaatctttgttgtgtaatctccgtcgcgc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6635142 aacaagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctcaatctttgttgtgtaatctccgtcgcgc 6635241  T
Q  316 catttttctagatcaattaccataaccccggtattaaagtaacaagcttttcgattcgtgaatgttaaagacaaagatgggttggaccaaaatgttggtg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6635242 catttttctagatcaattaccataaccccggtattaaagtaacaagcttttcgattcgcgaatgttaaagacaaagatgggttggaccaaaatgttggtg 6635341  T
Q  416 tgaagtaaaatgtgaaatttgcattgcaatactctggtgctgccaaaactgcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6635342 tgaagtaaaatgtgaaatttgcattgcaatactctggtgctgccaaaactgcat 6635395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 52163840 - 52164285
Alignment:
Q  19 agatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactg 118  Q
    |||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |    
T  52163840 agatcatagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacag 52163939  T
Q  119 gaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgcaaaaac 218  Q
    |||| |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||| | ||| ||||||||    
T  52163940 gaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgatccaccggagcaatattcccggcaaaaac 52164039  T
Q  219 aagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctcaatctttgttgtgtaatctccgtcgcgccat 318  Q
    ||||||||| || ||||| ||||| | ||||||||| ||||||||||| || || |||||||| |||||||||||||  || ||||| || || | ||||    
T  52164040 aagcaaaaacggcggcaacgaacccaattcatagatcctcatcctcttctgcaactccatccaatcctcaatctttgcagtataatccccttctctccat 52164139  T
Q  319 ttttctagatcaattaccataaccccggtattaaagtaacaagcttttcgattcgtgaatgttaaagacaaagatgggttggaccaaaatgttggtgtga 418  Q
      ||| | |||||| ||||| || || || || || |||||||  ||||||||||  || || | ||||||||| || || |||||||| | ||| || |    
T  52164140 cgttccaaatcaatcaccatcacacccgtgttgaaataacaaggctttcgattcgcaaaagtgagagacaaagaaggattagaccaaaacgatggagtaa 52164239  T
Q  419 agtaaaatgtgaaatttgcattgcaatactctggtgctgccaaaac 464  Q
    | ||| |  |||||||||| || ||||| || |||||||| |||||    
T  52164240 aataagaactgaaatttgcgttacaatattcaggtgctgctaaaac 52164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 42171887 - 42171780
Alignment:
Q  88 ccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctat 187  Q
    ||||| |||||||||||||| | |||||| ||||||||||| | ||| |  |||||||||   | |||||||||||| |  ||||| |||||||||||||    
T  42171887 cctttcccactccaatgcaaaagactcaccggaccaggatgcaaatcacggcaaagaccttccacattatcaccacctaacccatgctgattccatctat 42171788  T
Q  188 gatccact 195  Q
    | ||||||    
T  42171787 gctccact 42171780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 15964178 - 15964453
Alignment:
Q  19 agatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactg 118  Q
    |||||||||||  ||||||| | ||| |||||||||| | | ||  |||| |  || ||||| ||||| |||||||||||||||||||||||||| || |    
T  15964178 agatcataaggctcccaaagtgaatctaaaggacaagcttttttctcatcaagcctaacccaaggttttccttttccactccaatgcaataaactaacag 15964277  T
Q  119 gaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgcaaaaac 218  Q
    |||||||||| | |  |||||||| |||    ||||||||||||||||| ||||||||||||||||||||||| |  |   |||  |  |||||||||||    
T  15964278 gaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccatgttgattccatctatgatcaatagcttcaacatttcctgcaaaaac 15964377  T
Q  219 aagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctcaatcttt 294  Q
    ||| |||||||||||||||||||| || |||||||||||  || |||||||||| |||||||| |  |||||||||    
T  15964378 aagtaaaaaaggtggcaatgaacctagctcatagattcttctcttcttttgtaactccatccagttttcaatcttt 15964453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 7266243 - 7266613
Alignment:
Q  13 tcaaaaagatcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaac 112  Q
    |||| ||| ||||| || ||||| | ||||||||| |||||||| | ||||||||| |  ||  |||| |||||||| || ||||||||||| | |||||    
T  7266243 tcaagaaggtcatatggggcccacaaagcatccaacggacaaggacgattagcatcaagcctggcccacggtttacccttcccactccaatgaagtaaac 7266342  T
Q  113 tcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgc 212  Q
    |||| || || ||||| | ||| | |||||| ||  | ||||||||||| ||||| |||||||||||||| | |||||| || ||||| ||||  |||||    
T  7266343 tcaccgggcccggatgcaaatcccgacaaagcccatggaaattatcaccgccaagcccatgttgattccaccgatgatcaaccggaactattttacctgc 7266442  T
Q  213 aaaaacaagcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatccattcctcaatctttgttgtgtaatctccgtcg 312  Q
     |||||||||| ||| || |||||||||||||| |||||||| ||||| ||||| || |  ||||||||||||   ||||  || || |||||||||       
T  7266443 gaaaacaagcagaaacggcggcaatgaaccaagctcatagatcctcattctcttctgaagctccatccattccgtcatctgcgtcgtataatctccgatc 7266542  T
Q  313 cgccatttttctagatcaattaccataaccccggtattaaagtaacaagcttttcgattcgtgaatgttaa 383  Q
    |||||     ||| |||||| |||||||| ||||| || |||||||| ||||| ||| ||| |||||||||    
T  7266543 cgccaccgcgctaaatcaatcaccataactccggtgttgaagtaacacgctttccgagtcgcgaatgttaa 7266613  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 33346846 - 33346586
Alignment:
Q  21 atcataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactgga 120  Q
    |||||| || ||||| | |||||||||||||||||  |||||  |||| |  ||  |||| || || |||||||||||||||||||| |||||||| ||     
T  33346846 atcatatggagcccacaaagcatccaaaggacaagccctattcccatcaagcctggcccacggcttcccttttccactccaatgcaacaaactcaccggg 33346747  T
Q  121 ccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgatccactggaacaatttcccctgcaaaaacaa 220  Q
    || ||||| | ||| | |||||| || |||||||||||||| || || ||||| |||||||| |  |||||||| ||   |||   ||| |||||||| |    
T  33346746 cctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgattccaccggtgatccaccggcgtaatcctcccggcaaaaacca 33346647  T
Q  221 gcaaaaaaggtggcaatgaaccaagttcatagattctcatcctcttttgtaattccatcca 281  Q
     |||||| || ||||| |||||||| |||||||||||||| ||||| || || ||||||||    
T  33346646 acaaaaacggcggcaacgaaccaagctcatagattctcattctcttctgcaactccatcca 33346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 2498498 - 2498608
Alignment:
Q  78 ccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttga 177  Q
    ||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | |  |||||||  | |   || |||||||||||||||||||||||||    
T  2498498 ccatggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttga 2498597  T
Q  178 ttccatctatg 188  Q
    |||||||||||    
T  2498598 ttccatctatg 2498608  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 27101086 - 27101196
Alignment:
Q  78 ccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttga 177  Q
    ||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | |  |||||||  | |   || |||||||||||||||||||||||||    
T  27101086 ccatggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttga 27101185  T
Q  178 ttccatctatg 188  Q
    |||||||||||    
T  27101186 ttccatctatg 27101196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 48999158 - 48999288
Alignment:
Q  66 atccaatctcacccatggtttaccttttccactccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccacca 165  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||| |  |||||||| || | |  ||||||   ||||  ||  ||||| |||||     
T  48999158 atccaacctcaaccatggtttaccttttccactccaatgcaataaactaataggaccagggtgtaaacttctacatttaccttcaatgttatctccacct 48999257  T
Q  166 agaccatgttgattccatctatgatccactg 196  Q
    | ||||||||| |||||||||||||||||||    
T  48999258 aaaccatgttggttccatctatgatccactg 48999288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 44641041 - 44641130
Alignment:
Q  99 ccaatgcaataaactcactggaccaggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatg 188  Q
    ||||||||| ||||| || ||||||||||| | ||||||||||  ||||   | |||||||||||| | ||||||||||||||| |||||    
T  44641041 ccaatgcaacaaactaacaggaccaggatgcaaatctctacaactacctttcacattatcaccacctaaaccatgttgattccacctatg 44641130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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