View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_low_4 (Length: 406)
Name: NF18060_low_4
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 54793985 - 54793599
Alignment:
| Q |
17 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793985 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
54793886 |
T |
|
| Q |
117 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793885 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
54793786 |
T |
|
| Q |
217 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
316 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793785 |
ctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
54793686 |
T |
|
| Q |
317 |
atggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattctt |
403 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793685 |
atggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattctt |
54793599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 52286666 - 52286280
Alignment:
| Q |
17 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52286666 |
cacttggattgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttctcatcttc |
52286567 |
T |
|
| Q |
117 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
216 |
Q |
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|||||| || ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
52286566 |
ctcattcatgactgactgtgtcaatataatagtattaccgtgttaattattatactatttctacattgaggcataactactgcaaaaacacagagcatgt |
52286467 |
T |
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| Q |
217 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
316 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
52286466 |
ctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttcacattctcctgccaaaaagagcaaagctcc |
52286367 |
T |
|
| Q |
317 |
atggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccattctt |
403 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||| |
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| T |
52286366 |
atggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgatcaaggtctcccattctt |
52286280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 54775654 - 54775932
Alignment:
| Q |
17 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54775654 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttctcatcttc |
54775753 |
T |
|
| Q |
117 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775754 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
54775853 |
T |
|
| Q |
217 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcc |
295 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54775854 |
ctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacatgctcc |
54775932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 801829 - 801450
Alignment:
| Q |
17 |
cacttgggttgtattcatttacttctttcaaggctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttc |
116 |
Q |
| |
|
||||||||||||| || || |||||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||| || |||||||||||| |
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| T |
801829 |
cacttgggttgtactcgttaacttcttttaaggctgttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttctcatcttc |
801730 |
T |
|
| Q |
117 |
ctcatttataactgactgtgtcaatataacagtattaccgtgttaattactatactatttctacattgaagcatagctacttcaaaaacacagagcatgt |
216 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||||||||||||| || ||||||||| ||||| || |||| ||| ||||||||||||||||| |
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|
| T |
801729 |
ctcatctataactgactgtgtcaatacaacaatattaccgtgttaattattacactatttctctattgaggcttagccactccaaaaacacagagcatgg |
801630 |
T |
|
| Q |
217 |
ctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgctgaatttttcacattctcctgccaaacagagcaaagctcc |
316 |
Q |
| |
|
||||| |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||| | |||||||||||| |
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| T |
801629 |
ctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcacattttcctgccataaagagcaaagctca |
801530 |
T |
|
| Q |
317 |
atggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaaggtctcccat |
399 |
Q |
| |
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| |||||| ||||||||||| || |||| |||||||||||||||| | | |||||||||||||| |||||||||||||| |
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| T |
801529 |
acggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaaggtctcccat |
801450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 54775950 - 54775982
Alignment:
| Q |
371 |
acaaaaaccttctcatcaaggtctcccattctt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattctt |
54775982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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