View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_low_7 (Length: 360)
Name: NF18060_low_7
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 43067798 - 43068141
Alignment:
| Q |
19 |
gttgggaacgtttatctgtttaatctgatagcgtaatatagaccgtctgatctcaattcagtatgagataatttatatcgtgtaaaactatatcaacata |
118 |
Q |
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| T |
43067798 |
gttgagaacgtttatttgtttaatctaatagcgtaatatagaccgtctgatctcaattcaatacgagataatttatattacgtaaaactatatcaacata |
43067897 |
T |
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| Q |
119 |
ctaaaattctaaaattatatcaa-----------aaatctggtcgtaacttac--------atatgacatgaaatattctaaaattctttaaagaaaagg |
199 |
Q |
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| T |
43067898 |
ctacaattctaaaattatatcaacatactatgggaaatctggtcgtaacttacatagttacatatgacatgaaatattctaaaattctttaaagaaaagg |
43067997 |
T |
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| Q |
200 |
aaacatgctataagtacactttttaccttaaatggattaaacctatcttttccatatttttctttattatattttctttcagattgaaatttatgatgga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43067998 |
aaacatgctataagtacactttttaccttaaatggattaaacctatcttttccatatttttctttatcatattttctttcagattgaaatttatgatgga |
43068097 |
T |
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| Q |
300 |
ttaggttgtcgaattggaatacacttatctgatatggctttatg |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43068098 |
ttaggttgtcgaattggaatacacttatctgatatggctttatg |
43068141 |
T |
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