View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18060_low_9 (Length: 340)
Name: NF18060_low_9
Description: NF18060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18060_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7570782 - 7571035
Alignment:
| Q |
1 |
agttaaaaatatgaagatttatcaaatattgctatattgttcaattggagtaatagctggtatggttggagggttgcttggtctaggaggtggcttcatt |
100 |
Q |
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| T |
7570782 |
agttaaaaatatgaagatttatcaaatattgctatattgttcaattggagtaatagctggtatggttggagggttgcttggtctaggaggtggcttcatt |
7570881 |
T |
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| Q |
101 |
ttggggccactctttctagaaatgggaattcctccgcaggtacattcttcgtaattcttgtgtgtttggattagaggattttatgaaataatgtagtttt |
200 |
Q |
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| T |
7570882 |
ttggggccactctttctagaaatgggaattcctccgcaggtacattcttcgtaattcttgtgtgtttggattagaggattttatgaaataatgtagtttt |
7570981 |
T |
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| Q |
201 |
agagagtaatttaaatcttttggtgtaaattttaatatttcattgtttaaacga |
254 |
Q |
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| T |
7570982 |
agagagtaatttaaatcctttggtgcaaattttaatatttcattgtttaaacga |
7571035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 7571061 - 7571117
Alignment:
| Q |
266 |
ttttacaatgaatggaatttcaaaaatattttgtcaacactaattttaggggatttt |
322 |
Q |
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| T |
7571061 |
ttttacaatgaatggaatttcaaaaatattttgtcaacactaattttaggggatttt |
7571117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 33124192 - 33124094
Alignment:
| Q |
46 |
tggagtaatagctggtatggttggagggttgcttggtctaggaggtggcttcattttggggccactctttctagaaatgggaattcctccgcaggtaca |
144 |
Q |
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| T |
33124192 |
tggaataatagctggtatggttagtggtttgcttggtctaggtggtggcttcattttgggaccattgtttttggaattgggaattcctcctcaggtaca |
33124094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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