View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_high_12 (Length: 341)
Name: NF18061_high_12
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 88 - 321
Target Start/End: Complemental strand, 5271597 - 5271371
Alignment:
| Q |
88 |
agttaggatattttgaatttaaaacgtaaaaggttggtggtgtagcatagaacaacaagaaatccgaaatccgaaatcccaaacgaaattgatggataat |
187 |
Q |
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| T |
5271597 |
agttaggatattttgaatttaaaacgtaaaaggttggtggtgtagcatagaacaacaagaaatccgaaatcc-------caaacgaaattgatggataat |
5271505 |
T |
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| Q |
188 |
aacaaggaatggcatcttcgcatctcaccttagattcttctgtcgacatcgtttgcgtcttaaatttcgcttctattctcatttcttttcttcactcttc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5271504 |
aacaaggaatggcatcttcgcatctcaccttagattcttctgtcgacatcgtttgcgtcttaaatttcgcttctattctcatttcttttcgtcactcttt |
5271405 |
T |
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| Q |
288 |
aaattaacgtaccttttcttctccctttcataaa |
321 |
Q |
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| T |
5271404 |
aaattaacgtaccttttcttctccctttcataaa |
5271371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 5271711 - 5271639
Alignment:
| Q |
12 |
aaaggagtgaggaaaagacatatagatagatagtcaataactaaaatcaataaaaatatggaaattcttgtcctaaa |
88 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5271711 |
aaaggagtgaggaaaagacatatagatag----tgaataactaaaatcaacaaaaatatggaaattcttgtcctaaa |
5271639 |
T |
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