View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_high_16 (Length: 316)
Name: NF18061_high_16
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_high_16 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 38709580 - 38709265
Alignment:
| Q |
1 |
ttagttcatggtataataaaaagaaatgatgtccgatagataagtcctggaggttcagatcgaattgctagatatatgatatttcatagttataacccga |
100 |
Q |
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| T |
38709580 |
ttagttcatggtataataaaaagaaatgatgtccgatagataagtcctggaggttcagatcgaattgctagatatatgatatctcatagttataacccga |
38709481 |
T |
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| Q |
101 |
gacatatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatg |
200 |
Q |
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| T |
38709480 |
gacatatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatg |
38709381 |
T |
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| Q |
201 |
cattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttcgatttcatcatcaccaatgacctca |
300 |
Q |
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| T |
38709380 |
cattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcaccaatgacctca |
38709281 |
T |
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| Q |
301 |
tatccattttcaccga |
316 |
Q |
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| T |
38709280 |
tatccattttcaccga |
38709265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 10047358 - 10047302
Alignment:
| Q |
260 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccga |
316 |
Q |
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| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccga |
10047302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
150 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
213 |
Q |
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| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
132 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
205 |
Q |
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| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 25078763 - 25078815
Alignment:
| Q |
158 |
actaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaa |
210 |
Q |
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| T |
25078763 |
actaataaaagagacactcgtggatgtgtttgcaatttcgatacattcaagaa |
25078815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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