View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_high_20 (Length: 271)
Name: NF18061_high_20
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 38160424 - 38160664
Alignment:
| Q |
9 |
atcacagattgtgcttgtacaggaggaaggatttgagactaaccaaatagggtctgaagaaatggaactcaatatttctcttgttcttgagaagattgag |
108 |
Q |
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| T |
38160424 |
atcacagattgtgcttgtacaggaggaaggatttgagactaaccaaattgggtctgaggaaatggaactcaatgtttctcttgttcttgagaagattgag |
38160523 |
T |
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| Q |
109 |
aattttactcagagggaagctttatatagttgttacacttacacactgtttgaagcttgaaatcatactctagatgaatgttaactcttttaaatgttta |
208 |
Q |
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| T |
38160524 |
aattttactcagagggtagctatataaa---gttacacctacacactgtttgaagcttgaaatcatactgtagatgaatgttaaatctttgaaatgttta |
38160620 |
T |
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| Q |
209 |
attgttgattgtttgtaggtgactgagctcttagaatcagggaa |
252 |
Q |
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| T |
38160621 |
attgtggatttcttgtaggtatctgagctcttggaatcagggaa |
38160664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 38116624 - 38116750
Alignment:
| Q |
13 |
cagattgtgcttgtacaggaggaaggatttgagactaaccaaatagggtctgaagaaatggaactcaatatttctcttgttcttgagaagattgagaatt |
112 |
Q |
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| T |
38116624 |
cagattgtacttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaatt |
38116723 |
T |
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| Q |
113 |
ttactcagagggaagctttatatagtt |
139 |
Q |
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| T |
38116724 |
ttacccagagggtagctatataaagtt |
38116750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 38116767 - 38116839
Alignment:
| Q |
180 |
agatgaatgttaactcttttaaatgtttaattgttgattgtttgtaggtgactgagctcttagaatcagggaa |
252 |
Q |
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| T |
38116767 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcatgtaggtatctgagctcttggaatcagggaa |
38116839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 49004405 - 49004641
Alignment:
| Q |
13 |
cagattgtgcttgtacaggaggaaggatttgagactaaccaaatagggtctgaagaaatggaactcaatatttctcttgttcttgagaagattgagaatt |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
49004405 |
cagattgtacttgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctgaatatttctcttgttcttgagaagattgagaatt |
49004504 |
T |
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| Q |
113 |
ttactcagagggaagctttatatagttgttacacttacacactgtttgaagcttgaaatcatactctagatgaatgttaactcttttaaatgtttaattg |
212 |
Q |
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|||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
49004505 |
ttactcagagggtagctatata---atgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaattg |
49004601 |
T |
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| Q |
213 |
ttgattgtttgtaggtgactgagctcttagaatcagggaa |
252 |
Q |
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| T |
49004602 |
tggatttcttgtaggtatctgagcttttggaatcagggaa |
49004641 |
T |
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