View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_high_28 (Length: 246)
Name: NF18061_high_28
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 36092911 - 36093129
Alignment:
| Q |
18 |
atcatacatagaatctatgttctcactaaaacgagcagtattttgaatttgctcaagtttgagtcgagcgactcctctttcactttgtatattcttcctt |
117 |
Q |
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| T |
36092911 |
atcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgtatattcttcctt |
36093010 |
T |
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| Q |
118 |
tgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagtatcaactgattttttacaatttgtttgctctaaggaagtttcatgatcag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36093011 |
tgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagagtcaactgattttttataatttgtttgctctaaggaagtttcatgatcag |
36093110 |
T |
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| Q |
218 |
taactctttcttcttcttc |
236 |
Q |
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||||||||||||||||||| |
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| T |
36093111 |
taactctttcttcttcttc |
36093129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 36086916 - 36087137
Alignment:
| Q |
16 |
atatcatacatagaatctatgttctcactaaaacgagcagtattttgaatttgctcaagtttgagtcgagcgactcctctttcactttgtatattcttcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
36086916 |
atatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagtttgagtcgagcgatttctctttcactttgtatattcttcc |
36087015 |
T |
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| Q |
116 |
tttgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagtatcaactgattttttacaatttgtttgctctaaggaagtttcatgatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
36087016 |
tttgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagtatcaactggctttttataatttgtttgctctaaggaagtttcatgatc |
36087115 |
T |
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| Q |
216 |
agtaactctttcttcttcttct |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
36087116 |
agtaactctttcttcttcttct |
36087137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 36082192 - 36082371
Alignment:
| Q |
58 |
ttttgaatttgctcaagtttgagtcgagcgactcctctttcactttgtatattcttcctttgtctccaattagccaaaatcttcttcacttcttgatgat |
157 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
36082192 |
ttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattaaccaaaatcttcttcactttatgatgat |
36082291 |
T |
|
| Q |
158 |
cgataagagtatcaactgattttttacaatttgtttgctctaaggaagtttcatgatcagtaactctttcttcttcttct |
237 |
Q |
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| T |
36082292 |
cgataaaagtttcagcttattttttataatttgtttgctctaatgaagtttcctgatcattacttctttcttcttcttct |
36082371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 36090458 - 36090651
Alignment:
| Q |
16 |
atatcatacatagaatctatgttctcactaaaacgagcagtattttgaatttgctcaagtttgagtcgagcgactcctctttcactttgtatattcttcc |
115 |
Q |
| |
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||||||| ||||||||| ||||| |||||||||| |||||| |||| ||||||||||||||||||||||||| || |||||||| ||||| |||||||| |
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| T |
36090458 |
atatcatgcatagaatccatgttttcactaaaacaagcagtgtttttaatttgctcaagtttgagtcgagcggcttctctttcaatttgtgtattcttca |
36090557 |
T |
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| Q |
116 |
tttgtctccaattagccaaaatcttcttcacttcttgatgatcgataagagtatcaactgattttttacaatttgtttgctctaaggaagtttc |
209 |
Q |
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|| |||||| |||||||||||||||||| |||| |||||||| |||| ||| ||| ||||||||||| |||| ||||||||| | |||||||| |
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| T |
36090558 |
ttcgtctccgattagccaaaatcttcttagcttcatgatgatcaataaaagtgtcagctgattttttataattcgtttgctctgatgaagtttc |
36090651 |
T |
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