View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18061_high_3 (Length: 621)

Name: NF18061_high_3
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18061_high_3
NF18061_high_3
[»] chr3 (11 HSPs)
chr3 (316-499)||(37119069-37119252)
chr3 (7-163)||(37119374-37119530)
chr3 (193-288)||(37119249-37119344)
chr3 (21-158)||(37131101-37131238)
chr3 (21-152)||(37135158-37135289)
chr3 (21-134)||(37125064-37125177)
chr3 (208-257)||(37124937-37124986)
chr3 (507-606)||(4575800-4575899)
chr3 (239-298)||(37135385-37135444)
chr3 (507-606)||(3590952-3591051)
chr3 (507-606)||(9786740-9786839)
[»] chr5 (1 HSPs)
chr5 (21-164)||(1193920-1194063)
[»] chr7 (1 HSPs)
chr7 (21-164)||(31296978-31297121)
[»] chr4 (5 HSPs)
chr4 (507-606)||(13090675-13090774)
chr4 (513-606)||(44743558-44743651)
chr4 (507-606)||(22590786-22590885)
chr4 (514-606)||(4527746-4527838)
chr4 (507-606)||(14642102-14642201)
[»] chr6 (1 HSPs)
chr6 (507-606)||(26333513-26333611)
[»] chr1 (3 HSPs)
chr1 (21-152)||(20269090-20269221)
chr1 (507-606)||(6578282-6578381)
chr1 (239-298)||(20269317-20269376)
[»] chr2 (1 HSPs)
chr2 (507-606)||(7231602-7231701)
[»] scaffold0005 (1 HSPs)
scaffold0005 (507-606)||(175091-175190)
[»] chr8 (1 HSPs)
chr8 (552-605)||(29565396-29565449)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 316 - 499
Target Start/End: Complemental strand, 37119252 - 37119069
Alignment:
Q  316 atgtatggtgtgagcatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggatattttgtattttttcttcgtatg 415  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37119252 atgtatggtgtgaccatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggattttttgcattttttcttcgtatg 37119153  T
Q  416 ttattagcaaagtaggtagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 499  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119152 ttattagcaaagtaggcagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 37119069  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 37119530 - 37119374
Alignment:
Q  7 atgtcgaagaatattattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaact 106  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37119530 atgtccaaaaatattattcaggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaact 37119431  T
Q  107 cacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119430 cacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt 37119374  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 37119344 - 37119249
Alignment:
Q  193 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37119344 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatcatgtgaatgt 37119249  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 37131238 - 37131101
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||| ||| || |||||||| ||||||| | ||| ||||||||||||||||| ||||||||||||||  ||| || |||||||| ||| || |    
T  37131238 tattcaggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaa 37131139  T
Q  121 gaaagaaattctgtcatgcagatttggtgagtgttggt 158  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37131138 gaaagaaattctgtcatgcagaattggtgagtgttggt 37131101  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 37135158 - 37135289
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||| || || ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |    
T  37135158 tattcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaa 37135257  T
Q  121 gaaagaaattctgtcatgcagatttggtgagt 152  Q
    ||||||||||| || |||||||||||||||||    
T  37135258 gaaagaaattcggttatgcagatttggtgagt 37135289  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 37125177 - 37125064
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    |||| |||||||||||||||||||||| ||||| ||||||| ||| |||| ||||| || |||||| |||||||| ||| || |||||||||||| || |    
T  37125177 tatttaggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaa 37125078  T
Q  121 gaaagaaattctgt 134  Q
    ||||||||||||||    
T  37125077 gaaagaaattctgt 37125064  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 37124986 - 37124937
Alignment:
Q  208 cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg 257  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  37124986 cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataagg 37124937  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 4575800 - 4575899
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||||||||||||||||| |||||| ||||||||||| || ||||| |||||||    
T  4575800 aatttattctgaacatttcgattagtttcactatgtgcgcaagtccaaagaaacataacaagtgtctccaatgatgtcatttctttagatggatgtaacc 4575899  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 37135385 - 37135444
Alignment:
Q  239 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 298  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  37135385 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 37135444  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 3591051 - 3590952
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    ||||||||||| | ||||| |||| |||| ||||| ||| |||| ||||||||||||   |  || ||||| |||||||||||||| ||||| |||||||    
T  3591051 aatttattttggacatttcgattagtctcactatgtgcacaactccaaagaaacatagtcaaagcttccaacgatgtcatttcattagatggatgtaacc 3590952  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 9786740 - 9786839
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    ||||||||||| | ||||| |||| |||| || || ||| |||| ||||||||||||   |  |||||||| |||||||||||||| ||||| |||||||    
T  9786740 aatttattttggacatttcgattagtctcactgtgtgcacaactccaaagaaacatagtcaaagcctccaacgatgtcatttcattagatggatgtaacc 9786839  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 1193920 - 1194063
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||| || |||||||| ||| || |    
T  1193920 tattcaggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgctaa 1194019  T
Q  121 gaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg 164  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  1194020 gaaagaaattctgtcatgcagaattggtgagtgttggtgaagtg 1194063  T

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Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 31297121 - 31296978
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||| ||| || | |||||| ||| || |    
T  31297121 tattcaggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgctaa 31297022  T
Q  121 gaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg 164  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  31297021 gaaagaaattatgtcatgcagaattggtgagtgttggtgaagtg 31296978  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 13090774 - 13090675
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13090774 aatttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 13090675  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 513 - 606
Target Start/End: Complemental strand, 44743651 - 44743558
Alignment:
Q  513 ttttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44743651 ttttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 44743558  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 22590885 - 22590786
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22590885 aatttattttgaatatttctattagtctcgctatgtgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcgtttgatgggtgcaacc 22590786  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 514 - 606
Target Start/End: Original strand, 4527746 - 4527838
Alignment:
Q  514 tttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    ||||||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  4527746 tttgaatgtttttattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctctaaggatgtcatttcatttgatgggtgcaacc 4527838  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 14642201 - 14642102
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  14642201 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaacc 14642102  T

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Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 26333513 - 26333611
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||| ||||||||| |||||||||||||| |||  ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  26333513 aatttattttgaatgtttctattagtctcgctatgcgcacaaccccaaagaaacattacaagtgcctccaaggatgtca-ttcatttgatgggtgtaacc 26333611  T

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Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 20269090 - 20269221
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |    
T  20269090 tattcaggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaa 20269189  T
Q  121 gaaagaaattctgtcatgcagatttggtgagt 152  Q
    ||||||||||| || |||||||||||||||||    
T  20269190 gaaagaaattcggttatgcagatttggtgagt 20269221  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 6578282 - 6578381
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||| ||||||||| |||| |||| |||| |||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  6578282 aatttattttgaatgtttctattagtctcactatacgcacaactccaaagaaatataataagtgcctccaagaatgtcatttcatttgatgggtgtaacc 6578381  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 20269317 - 20269376
Alignment:
Q  239 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 298  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  20269317 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 20269376  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 7231701 - 7231602
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| |||||||||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  7231701 aatttattctgaacatttctattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaacc 7231602  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 175091 - 175190
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  175091 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaacc 175190  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 605
Target Start/End: Complemental strand, 29565449 - 29565396
Alignment:
Q  552 caaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 605  Q
    ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||    
T  29565449 caaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaac 29565396  T

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