View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_high_9 (Length: 431)
Name: NF18061_high_9
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Original strand, 8865343 - 8865748
Alignment:
| Q |
19 |
agcaatgagggcagtaacatggtcactatttgctagtagaaaagcactaaactcaataacaatcaattacaagaatggatttgttcaagcattccataga |
118 |
Q |
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| T |
8865343 |
agcaatgagggcagtaacatggtcactatttgctagtagaaaagcactaaactcaataacaatcaattacaagaatggatttgttcaagcattccataga |
8865442 |
T |
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| Q |
119 |
gatctaaaagataacaacacattttacatctactcagatctttctaattactccatggttgcaacaacctcaaacatgctcaagtccatttcaactcatc |
218 |
Q |
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| T |
8865443 |
gatctaaaagataacaacacattttacatctactcagatctttctaattactccatggttgcaacaacctcaaacatgctcaagtccatttcaactcatc |
8865542 |
T |
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| Q |
219 |
aagcttgggatgataaaacacttcatggaaacttctcagcaatttggtatagagaaccacttgatcctgtcacaggcgaaaaaatcggaaaagcaatgaa |
318 |
Q |
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| T |
8865543 |
aagcttgggatgataaaacacttcatggaaacttctcagcaatttggtatagagaaccacttgatcctgtcacaggcgaaaaaatcggaaaagcaatgaa |
8865642 |
T |
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| Q |
319 |
aattgcaccagaagatttgatcaacatagcaggactttcacaagttcctgatggtgtagctacatggcatgtagcagttagtaaatttacagattcacct |
418 |
Q |
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| T |
8865643 |
aattgcaccagaagatttgatcaacatagcaggactttcacaagttcctgatggtgtagctacatggcatgtagcagttagtaaatttacagattcacct |
8865742 |
T |
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| Q |
419 |
ttgctt |
424 |
Q |
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| T |
8865743 |
ttgctt |
8865748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 40558468 - 40558400
Alignment:
| Q |
114 |
atagagatctaaaagataacaacacattttacatctactcagatctttctaattactccatggttgcaa |
182 |
Q |
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| T |
40558468 |
atagagatctaaaagataagaacacattttccatctaccaagatttttcaaattactccatggttgcaa |
40558400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 31863266 - 31863211
Alignment:
| Q |
278 |
cttgatcctgtcacaggcgaaaaaatcggaaaagcaatgaaaattgcaccagaaga |
333 |
Q |
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| T |
31863266 |
cttgatcctgtcaatggcgagaaaattggaaaagcaatgaagattgcaccagaaga |
31863211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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