View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_11 (Length: 356)
Name: NF18061_low_11
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 39871619 - 39871295
Alignment:
| Q |
18 |
aatcatttgctttcatttgtgattttaagtaatgacaattgatagacaaaaagcaacgcctcagcttcttttttgacagtatcacataccagctctatga |
117 |
Q |
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| T |
39871619 |
aatcatttgctttcatttgtgattttaagtaatgacaattgatagacaaaaagcaa---------ttcttttttgacagtatcacataccagctctatga |
39871529 |
T |
|
| Q |
118 |
aagcaatacatcttattttcctcatatcgtttctgtcactccttaccgacataactggaatggaaattttgaacgcaacataaagaaaaaagaatgaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39871528 |
aagcaatacatcttattttcctcatatcgtttctgtcactccttaccgacataactggaatggaaattttgaacgcaacataaagaaaaaagaatgaaaa |
39871429 |
T |
|
| Q |
218 |
tcaaattaccacatcacttcacattacaagtttacattatagtattattaaacactattctcaagaggaagtaatgcggttttttataccctacaataac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39871428 |
tcaaattaccacatcacttcacattacaagtttacattatagtattattaaacaccattctcaagaggaagtaatgcggttttttataccctacaataac |
39871329 |
T |
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| Q |
318 |
gaaatggaaagaaagatcttcgacctttgctact |
351 |
Q |
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||||||||||||||||||||||||| ||| |||| |
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| T |
39871328 |
gaaatggaaagaaagatcttcgacccttgttact |
39871295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 35382550 - 35382228
Alignment:
| Q |
18 |
aatcatttgctttcatttgtgattttaagtaatga-caattgatagacaaaaagcaacgcctcagcttcttttttgacagtatcacataccagctctatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
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| T |
35382550 |
aatcatttgctttcatttgtgattttaagtaatgatcaattgatagacaaaaagcaacgcctc---ttattttttgacagtatcacatatcagctctatg |
35382454 |
T |
|
| Q |
117 |
aaagcaatacatcttattttcctcatatcgtttctgtcactccttaccgacataactggaatggaaattttgaacgcaacataaagaaaaaagaatgaaa |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35382453 |
aaagcaatacctcttattttcctcatatcgtttctgtcactccttactgacataactggaatggaaattttgaacgcaacataaagaaaaaagaatgaaa |
35382354 |
T |
|
| Q |
217 |
atcaaattaccacatcacttcacattacaagtttacattatagtattattaaacactattctcaagaggaagtaatgcggttttttataccctacaataa |
316 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
35382353 |
atcaaattaccacaacacttcatattacaagtttacattatagtattattaaacactattctcaagaggaagtaatgcagttttttataccctataataa |
35382254 |
T |
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| Q |
317 |
cgaaatggaaagaaagatcttcgacc |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35382253 |
cgaaatggaaagaaagatcttcgacc |
35382228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 113 - 342
Target Start/End: Original strand, 38806195 - 38806427
Alignment:
| Q |
113 |
tatgaaagcaatacatcttattttcctcatatcgtttctgtcactccttaccgacataactggaatggaaattttgaacgcaacataaagaaaaaagaat |
212 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
38806195 |
tatgaaagcagtatctcttattttcctcatatcgtttctgtcactccttactgacataactggaatggaaattttgaacgcaacagaaagaaaaaataat |
38806294 |
T |
|
| Q |
213 |
gaaaatcaaattaccacatcacttcacattacaagtttacattata-----gtattattaaacactattctcaagaggaagtaatgcggttttttatacc |
307 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||| |||||||||||| |
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| T |
38806295 |
caaaatcaaattatcacatcacttcacattacaagtttacattatacgtatttattattaaacactgttct--tgaggatgtaatgcagttttttatacc |
38806392 |
T |
|
| Q |
308 |
ctacaataacgaaatggaaagaaagatcttcgacc |
342 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
38806393 |
ctaccataacgaaatggaaagaaagatcttcgacc |
38806427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 38806118 - 38806154
Alignment:
| Q |
18 |
aatcatttgctttcatttgtgattttaagtaatgaca |
54 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
38806118 |
aatcattggctttcatttgtgattttaagtaatgaca |
38806154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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