View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_12 (Length: 355)
Name: NF18061_low_12
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 50087202 - 50086860
Alignment:
| Q |
1 |
actacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtttggaaatgtaa |
100 |
Q |
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| T |
50087202 |
actacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtttggaaatgtaa |
50087103 |
T |
|
| Q |
101 |
cagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctagtctactactcta |
200 |
Q |
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| T |
50087102 |
cagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactctagtc---tactcta |
50087006 |
T |
|
| Q |
201 |
ttgggagaaaagaaattcattcaaggtggt-nnnnnnntatttggtcaattactttgaatatttcagtcaaatactattttattgatactgtaaaatagt |
299 |
Q |
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| T |
50087005 |
ttgggagaaaagaaattcattcaaggtggtaaaaaaaatatttggtcaattactttgaatatttcagtcaaatactattttattgatactgtaaaatagt |
50086906 |
T |
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| Q |
300 |
tcatgagtggtcatagttataccatttggccccttcactctctctg |
345 |
Q |
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| T |
50086905 |
tcatgagtggtcatagttataccatttggccccttcactctctctg |
50086860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 23271463 - 23271277
Alignment:
| Q |
1 |
actacattgaatcaaaaggtaggatgaagaaaggagacagggtatggcagatagcatttggcagtggatttaaatgcaatagtgctgtttggaaatgtaa |
100 |
Q |
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|||| |||||||||||||| |||||||||| ||| || || |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
23271463 |
actatattgaatcaaaaggaaggatgaagagaggtgatagagtatggcaaatagcttttggaagtggatttaaatgcaatagtgctgtgtggaaatgtaa |
23271364 |
T |
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| Q |
101 |
cagaagcattaagacacctattgatggaccttggacagattgcattgatcgttacccagttcatattcctgaaattgttaaactcta |
187 |
Q |
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||||||||||| |||||| || ||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||| ||||| |
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| T |
23271363 |
tagaagcattaaaacacctgttaatggaccttgggaagattgcattgatcgctatccagttcatattcctgagattgttaagctcta |
23271277 |
T |
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