View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18061_low_14 (Length: 338)
Name: NF18061_low_14
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_14 |
 | |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 50650 - 50946
Alignment:
| Q |
21 |
agattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50650 |
agattcacatggtttactctaaagtaatattaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
50749 |
T |
|
| Q |
121 |
aaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50750 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
50849 |
T |
|
| Q |
221 |
aattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
50850 |
aattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattactttgaatcttcaatcatgatcc |
50946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 44498918 - 44498622
Alignment:
| Q |
21 |
agattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44498918 |
agattcacatggtttactctaaagtaatattaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatac |
44498819 |
T |
|
| Q |
121 |
aaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
220 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44498818 |
aaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaacaaac |
44498719 |
T |
|
| Q |
221 |
aattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44498718 |
aattagatagccaaaatggtttcactaaagagatgtcgacataactaatattaccaaataatgctccttgattactttgaatcttcaatcatgatcc |
44498622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 3381510 - 3381221
Alignment:
| Q |
18 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
3381510 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttagttaaagccaatccagcaaaaggtgcaaa |
3381411 |
T |
|
| Q |
118 |
tacaaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
217 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3381410 |
tacaaatttgtatctaaaatagttaacccagcccttacatatttcatacaaaatatgacaactccataaatggaaaattttaact----------caaca |
3381321 |
T |
|
| Q |
218 |
aacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3381320 |
aacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
3381221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 7291 - 7005
Alignment:
| Q |
18 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7291 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
7205 |
T |
|
| Q |
118 |
tacaaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7204 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
7105 |
T |
|
| Q |
218 |
aacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7104 |
aacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttgaatcttcaatcacgatcc |
7005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 17204 - 16918
Alignment:
| Q |
18 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17204 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
17118 |
T |
|
| Q |
118 |
tacaaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17117 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
17018 |
T |
|
| Q |
218 |
aacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17017 |
aacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttgaatcttcaatcacgatcc |
16918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 21778 - 22064
Alignment:
| Q |
18 |
cacagattcacatggtttactctaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21778 |
cacagattcacatggtttacactaaagtaatatcaaatccaagattcaagcttaaaaacaaaacatactt-------------ccagcaaaaggtgcaaa |
21864 |
T |
|
| Q |
118 |
tacaaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21865 |
tacaaatttgtatccaaaatagttaacccagcccttacataattcacacaaaatatgacaactccataaatggaaaattttaactaagaaagggacaaca |
21964 |
T |
|
| Q |
218 |
aacaattagatagccaaaatggtttcactaaagacatgtcggcataactaatattaccaaacaatgctccttgattactttgaatcttcaatcacgatcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21965 |
aacaattagatagccaaaatggtttcactaaagagatgtcggcataactaatattaccaaataatgctccttgattactttgaatcttcaatcacgatcc |
22064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 89 - 254
Target Start/End: Original strand, 30111884 - 30112048
Alignment:
| Q |
89 |
attaaagccaatccagcaaaaggtgcaaatacaaatttgtatccaaaattgttaacccagcccttacataattcacacaaaatatgacaactccataaat |
188 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
30111884 |
attaaagccaatccagcaaaagttacaaatacaaatttgtatccaaaatagttaactcagcccttacattattcacacaaaatatgacaaat-cataaat |
30111982 |
T |
|
| Q |
189 |
ggaaaattttaactaagaaagggacaacaaacaattagatagccaaaatggtttcactaaagacat |
254 |
Q |
| |
|
||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
30111983 |
ggaaaatttcaactacgaaagggtgaacaaaacattagatagccaaaatgatttcactaaagacat |
30112048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 30110718 - 30110775
Alignment:
| Q |
23 |
attcacatggtttactctaaagt-aatatcaaatccaagattcaagcttaaaaacaaa |
79 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
30110718 |
attcacatggtttactctaaagtgaatatcaaatccaagatataagcttaaaaacaaa |
30110775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 9200091 - 9200166
Alignment:
| Q |
59 |
agattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatacaaatttgtatccaaaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| |||||||| |
|
|
| T |
9200091 |
agattcaagcttaaaaacaaaacatacttaactaaagccaatcca-aaaaagttgc-aatacaaatttggatccaaaa |
9200166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 9201854 - 9201928
Alignment:
| Q |
59 |
agattcaagcttaaaaacaaaacatacttaattaaagccaatccagcaaaaggtgcaaatacaaatttgtatccaaaa |
136 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
9201854 |
agattcaagcttaaaaacaaaacctacttaactaaagccaatcca--aaaaattgc-aatacaaatttggatccaaaa |
9201928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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