View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18061_low_15 (Length: 327)

Name: NF18061_low_15
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18061_low_15
NF18061_low_15
[»] chr8 (1 HSPs)
chr8 (15-310)||(40383816-40384111)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 40384111 - 40383816
Alignment:
Q  15 aaaataattgcttgtcatggataaattggagtacttaccgtaacaaatatatctttgaggagaataccatagcacagccatataattgcacttgttgtga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40384111 aaaataattgcttgtcatggataaattggagtacttaccgtaacaaatatatctttgaggagaataccatagcacagccatataattgcacttgttgtga 40384012  T
Q  115 ggaggagtgaaagagtgaaaggcataaactcaacacttttggtgcgaataaccactctctgaaattgaacaaagattattcatgcataagcacatggtag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40384011 ggaggagtgaaagagtgaaaggcataaactcaacacttttggtgcgaataaccactctctgaaattgaacaaagattattcatgcataagcacatggtag 40383912  T
Q  215 ttataaagaataaagaagaattaagcaaattttgttatataatatgtaccataacgcttaaaggtgctgcaaaaacactagttgagaggacaacac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383911 ttataaagaataaagaagaattaagcaaattttgttatataatatgtaccataacgcttaaaggtgctgcaaaaacactagttgagaggacaacac 40383816  T

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