View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_16 (Length: 318)
Name: NF18061_low_16
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 46680448 - 46680734
Alignment:
| Q |
13 |
aatattgaactgagagagaacaaactaagcataaaaataaaggagcgtgttttagaacttacagtttcaaacactccaatttcttacagtgacagttttt |
112 |
Q |
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| T |
46680448 |
aatattgaactgagagagaacacactaagcataaaaataaaggagcgtgttttagaacttacagtttcaaacactccaatttcttacagtggcagttttt |
46680547 |
T |
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| Q |
113 |
gcatgtcccttcctccccacttagatctgactcatgcccttggctctcataaatatggaaagaagcagcgcagttcggcagttccggttgccttccagaa |
212 |
Q |
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| T |
46680548 |
gcatgtcccttcttccccacttagatctgactcatgcccttggctctcataaatatggaaagaagcagcgcagttcggcagttccggttgccttccagaa |
46680647 |
T |
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| Q |
213 |
gaagttatttcattttctatgccttcatatggtacattcaagtcaaaatcatttccttcattttccatgccatcataaggtacattc |
299 |
Q |
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| T |
46680648 |
gaagttatttcattttctatgccttcatatggtacattcaagtcaaaatcatttccttcattttccatgccatcataaggtacattc |
46680734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 46676907 - 46677000
Alignment:
| Q |
38 |
taagcataaaaataaaggagcgtgttttagaacttacagtttcaaacactccaatttcttacagtgacagtttttgcatgtcccttcctcccca |
131 |
Q |
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| T |
46676907 |
taagcataaaaccaaaggagcatgctttagaacttacagtttcatacactttgatttcttacagttgcagtttctgcatgaccctccttcccca |
46677000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 46680704 - 46680752
Alignment:
| Q |
221 |
ttcattttctatgccttcatatggtacattcaagtcaaaatcatttcct |
269 |
Q |
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| T |
46680704 |
ttcattttccatgccatcataaggtacattcaagtcaaaatcatttcct |
46680752 |
T |
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