View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18061_low_18 (Length: 310)
Name: NF18061_low_18
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_18 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 310
Target Start/End: Complemental strand, 43050149 - 43049858
Alignment:
| Q |
17 |
actttgcaccggtcaaaatcatctgccacagcccacattgatataacttccttaacaaagtagaaattgaatagtagttatagcaaatattcaacacgtt |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43050149 |
actttgcaccggtcaaaatcatctaccaca-------ttgatataacttccttaacaaagaagaaattgaatagtagttatagcaaatattcaacacgtt |
43050057 |
T |
|
| Q |
117 |
-----cacgaacttattacaaccgcgttatcccataaaaaatccaacccctattcctttctatatatacacaccacactttgctcctaatttatatcatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43050056 |
acgttcacgaacttattacaaccgcgttatcccataaaaaatccaacccctattcctttctatatatacacaccacactttgctcctaatttatatcatc |
43049957 |
T |
|
| Q |
212 |
acaagccacatcaatttctctccatcaaaccttcattatatatcttcttctcttcctttaattactatcacattaaaatatcaaaattctcgtgttcat |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43049956 |
acaacccacatcaatttctctccatcaaaccttcattatatatcttcttctcttcctttaattactatcaaattaaaatatcaaaattctcgtgttcat |
43049858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University