View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_22 (Length: 271)
Name: NF18061_low_22
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_22 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 44476338 - 44476091
Alignment:
| Q |
7 |
gtgagaagaaaaaacaaacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctat |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44476338 |
gtgacaagaaaaaacaaacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttcaaaatgtcagataaagtgcgtgctat |
44476239 |
T |
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| Q |
107 |
ttatgattcagctagaaatcgaaatgggcgaaagttacttcaaacaattgatgaaagtgttactgtaagtgaaattgtgattgttaatcaagatggaagt |
206 |
Q |
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| T |
44476238 |
ttatgattcagctagaaatcgacatgggcgaaagttacttcaaacaattgatgaaagtgttactgtaagtgaaattgtgattgttaatcaagatggaagt |
44476139 |
T |
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| Q |
207 |
ggaaattttacaacaattaatgatgctataaacgttgcaccaaataac |
254 |
Q |
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| T |
44476138 |
ggaaattttacaacaattaatgatgctataaacgttgcaccaaataac |
44476091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 44464965 - 44464910
Alignment:
| Q |
180 |
attgtgattgttaatcaagatggaagtggaaattttacaacaattaatgatgctat |
235 |
Q |
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| T |
44464965 |
attgtgacggttagtcaagatggaagtggaaactttaccacgattaatgatgctat |
44464910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 254
Target Start/End: Complemental strand, 24062070 - 24061846
Alignment:
| Q |
27 |
tcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctagaaatc |
126 |
Q |
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| T |
24062070 |
tcatggccacaaaaagggagacatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgcgctatttatgattcagctaga---c |
24061974 |
T |
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| Q |
127 |
gaaatgggcgaaagttacttcaaacaattgatgaaagtgttactgtaagtgaaattgtgattgttaatcaagatggaagtggaaattttacaacaattaa |
226 |
Q |
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| T |
24061973 |
gccatgggagaaaactacttcaaaccgatgaagatagtattttggtaagtgatattgttgttgttagtcaagatggaagtggaaacttcaccactatcaa |
24061874 |
T |
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| Q |
227 |
tgatgctataaacgttgcaccaaataac |
254 |
Q |
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| T |
24061873 |
tgatgcaatagctgctgcaccaaataac |
24061846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 39450185 - 39450284
Alignment:
| Q |
23 |
aacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
122 |
Q |
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| T |
39450185 |
aacatcatggccacaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctaga |
39450284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 39471057 - 39471156
Alignment:
| Q |
23 |
aacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
122 |
Q |
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| T |
39471057 |
aacatcatggccacaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctaga |
39471156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 3436 - 3337
Alignment:
| Q |
23 |
aacatcatggccacaaaatggaagacatttgaattttcacaacggtcatttacctttgaaaatgtcagataaagtgcgtgctatttatgattcagctaga |
122 |
Q |
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| T |
3436 |
aacatcatggccacaaaatggaaagcatttgaatttcaaaaatggtcgtttgccattgaagatgtcaaataaagcacgtgctatttatgattccgctaga |
3337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 19475227 - 19475283
Alignment:
| Q |
197 |
agatggaagtggaaattttacaacaattaatgatgctataaacgttgcaccaaataa |
253 |
Q |
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| T |
19475227 |
agatggaagtggaaactttagcactattaatgatgctataaactttgctccaaataa |
19475283 |
T |
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