View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_24 (Length: 254)
Name: NF18061_low_24
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 23747010 - 23747226
Alignment:
| Q |
20 |
caagtcaatcaaccaatttcagacagctgatgcaaaagggttaaaaccgtataattcatgatttgggtaatgatatttacaaccacataatgtactagat |
119 |
Q |
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| T |
23747010 |
caagtcaataaaccaatttcagacagcagatgcaaaagggttaaagcggtataattcatgatttgagtaatgatatttacaacatcataatgtactggat |
23747109 |
T |
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| Q |
120 |
ctcacagaatcttcaattaaccaatagagagagataccttgtcaggtttagtgactctagtttcgggtaattgtaggcaactaattgtacacctcggtct |
219 |
Q |
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| T |
23747110 |
ctcacagaatcttctatgaaccaat----agagataccttgtcaagtttagtgactctagtttcgggtaattgtcggcaactaattgtacacctcggtct |
23747205 |
T |
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| Q |
220 |
gaaatattctgcaatcatcat |
240 |
Q |
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| T |
23747206 |
gaaatattctgcaattatcat |
23747226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 240
Target Start/End: Original strand, 23686733 - 23686907
Alignment:
| Q |
62 |
aaaaccgtataattcatgatttgggtaatgatatttacaaccacataatgtactagatctcacagaatcttcaattaaccaatagagagagataccttgt |
161 |
Q |
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| T |
23686733 |
aaaaccatacaattcatcatttaagtaatgatatttacaacctcataatgcattagatctcacagaatcttctgaaaatcaatgcaga----taccttat |
23686828 |
T |
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| Q |
162 |
caggtttagtgactctagtttcgggtaattgtaggcaactaattgtacacctcggtctgaaatattctgcaatcatcat |
240 |
Q |
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| T |
23686829 |
caagtttagtaactctagttttgggtaattgtcagcaactaattgtacgccttggtctgaaatattctgcaatcatcat |
23686907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 23679113 - 23679168
Alignment:
| Q |
108 |
aatgtactagatctcacagaatcttcaattaaccaatagagagagataccttgtca |
163 |
Q |
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| T |
23679113 |
aatgtattagatctcacaaaatcttctataaaccaatagagagagatacattgtca |
23679168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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