View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_26 (Length: 250)
Name: NF18061_low_26
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_26 |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 6936234 - 6935997
Alignment:
| Q |
13 |
aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaactcaacaacaggactgttctcatgaatatcaatcgtctgataatcc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6936234 |
aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaactcaacaacaggactgttctcatgaatatcaatcgtctgataatcc |
6936135 |
T |
|
| Q |
113 |
tccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccga |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6936134 |
tccctgacgaacttatcgacaaagtcgtaacgccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccga |
6936035 |
T |
|
| Q |
213 |
tccagacttcgtcaaaaggcaccataagaagcaatcta |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6936034 |
tccagacttcgtcaaaaggcaccataagaagcaatcta |
6935997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 6922374 - 6922144
Alignment:
| Q |
19 |
cttctagggtttcttccacaaaaaattccaaagggttttcacttccaact-caacaacaggactgttctcatgaatatcaatcgtctgataatcctccct |
117 |
Q |
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|||||||||||||||||||||||| ||| || |||||||||| | ||||| ||||||| |||||||||||||||||| || |||| ||||||||| | |
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| T |
6922374 |
cttctagggtttcttccacaaaaagttcgaa-gggttttcacgtacaacttcaacaacct-actgttctcatgaatatccctcctctggtaatcctccat |
6922277 |
T |
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| Q |
118 |
gacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccag |
217 |
Q |
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| T |
6922276 |
gacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagtgtgtttccaagtcttggaaaaccctaatcttggatcccg |
6922177 |
T |
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| Q |
218 |
acttcgtcaaaaggcaccataagaagcaatcta |
250 |
Q |
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|||| | ||||| ||||| |||||||||||||| |
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| T |
6922176 |
actttgccaaaatgcaccttaagaagcaatcta |
6922144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 6948844 - 6948674
Alignment:
| Q |
79 |
actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagt |
178 |
Q |
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|||||||||||||||||| || |||| |||| |||| |||||| ||||||| ||||| |||| ||| |||||||| |||| ||| ||||||||| |
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| T |
6948844 |
actgttctcatgaatatccctcctctggtaattctccatgacgaccttatcgttgaagtcctaacgttcctc-acgtaaaatctctaatgttgatgaagt |
6948746 |
T |
|
| Q |
179 |
gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatcta |
250 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||| |
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| T |
6948745 |
gtgtttgcaagtcatggaaaaccctaatatccgatccctacttcgccaaaatgcaccttaagaagcaatcta |
6948674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 1986921 - 1986751
Alignment:
| Q |
79 |
actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagt |
178 |
Q |
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|||||||||||||||||| || |||| |||| |||| |||||||||||||| | ||||| |||| ||| ||||||||| |||| ||| ||||||||| |
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| T |
1986921 |
actgttctcatgaatatccctcctctggtaattctccatgacgaacttatcgtcgaagtcctaacgttcctcgacgtaaaatctctaatgttgatgaagt |
1986822 |
T |
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| Q |
179 |
gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatcta |
250 |
Q |
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|||||||||||||||||||||||||||| ||| |||| |||||| ||||| ||||| ||| |||||||||| |
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| T |
1986821 |
gtgtttgcaagtcatggaaaaccctaatatcccatccctacttcgccaaaatgcaccttaa-aagcaatcta |
1986751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 13417828 - 13417725
Alignment:
| Q |
147 |
ccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaa |
246 |
Q |
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|||||| |||||| ||||||| |||||||||||| |||||||| |||||||||||| |||| |||||| ||||||||||| ||||| ||||| |||| |
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| T |
13417828 |
ccttgatgtaaaatctctgataaggatgaagtgtgtatgcaagtcgtggaaaaccctattctctgatccactcttcgtcaaaatgcaccttaagaggcaa |
13417729 |
T |
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| Q |
247 |
tcta |
250 |
Q |
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|||| |
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| T |
13417728 |
tcta |
13417725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 19721222 - 19721293
Alignment:
| Q |
157 |
aaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaa |
228 |
Q |
| |
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||||||||||||| ||||| ||||| ||||| |||| ||||||||||||||| ||||| | ||||| |||| |
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| T |
19721222 |
aaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcccgccttcgccaaa |
19721293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 161085 - 161188
Alignment:
| Q |
147 |
ccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaa |
246 |
Q |
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||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||||| ||| |
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| T |
161085 |
ccttgacgtaaaatctcttatgcagatgaagtgtgtttgcaagtcttggaaaaccctaatctccgatccagtcttcgtcaaaatgcactttaagaaacaa |
161184 |
T |
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| Q |
247 |
tcta |
250 |
Q |
| |
|
|||| |
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|
| T |
161185 |
tcta |
161188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 160978 - 161052
Alignment:
| Q |
13 |
aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaa-ctcaacaacaggactgttctc |
87 |
Q |
| |
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|||| |||||||||||||||||||||||| ||| | |||||||||||||| ||| ||||||| | | ||||||||| |
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| T |
160978 |
aatacccttctagggtttcttccacaaaagatt-cgaagggttttcactttcaacctcaacacccgcactgttctc |
161052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 5437717 - 5437654
Alignment:
| Q |
172 |
atgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcacc |
235 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||| ||||| |
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| T |
5437717 |
atgaagtgtgtttgcaagtcatggaacaccctcatctccgaaccatttttcgtcaaaatgcacc |
5437654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 18921595 - 18921514
Alignment:
| Q |
154 |
gtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcacc |
235 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| |||| |||||||||||| || |||| ||||||||||| ||||| |
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| T |
18921595 |
gtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaaatgcacc |
18921514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 553767 - 553811
Alignment:
| Q |
172 |
atgaagtgtgtttgcaagtcatggaaaaccctaatctccgatcca |
216 |
Q |
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||||||||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
553767 |
atgaagtgtgtttgcaaatcatggaacaccctcatctctgatcca |
553811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 20578995 - 20578959
Alignment:
| Q |
179 |
gtgtttgcaagtcatggaaaaccctaatctccgatcc |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
20578995 |
gtgtttgcaaatcatggaaaaccctaatctctgatcc |
20578959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 42414172 - 42414210
Alignment:
| Q |
177 |
gtgtgtttgcaagtcatggaaaaccctaatctccgatcc |
215 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| |
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| T |
42414172 |
gtgtgtatgcaaatcatggaaaaccctaatctccgatcc |
42414210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 43907690 - 43907724
Alignment:
| Q |
175 |
aagtgtgtttgcaagtcatggaaaaccctaatctc |
209 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
43907690 |
aagtgtgtttgcaaatcatggaaaaccctaatctc |
43907724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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