View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_27 (Length: 249)
Name: NF18061_low_27
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23746876 - 23746646
Alignment:
| Q |
1 |
ctttctggtacattgttaggatatataaggagacgttagctagggacaattggcatggttagttgattagttagaggtaattagcttacataataaatag |
100 |
Q |
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| T |
23746876 |
ctttctggtacattgttaggatatataaggagacgttagttagggacaattggcatggttagttgattagttagaggtaattagcttacataatgaatag |
23746777 |
T |
|
| Q |
101 |
gacacaagtagagatggagagcattttttaaagtgacactaacagtcattttacttccgccttcatggaaatttgaaccaagtccctcgagtttacgaga |
200 |
Q |
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| T |
23746776 |
gacacaagtagagatggagagcattttttaaagcgacactaacagtcattttacttctgccttcatggaaatttgaactaagtccctcgagtttacgaga |
23746677 |
T |
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| Q |
201 |
cccttggacagaagggaaacccttggacaaa |
231 |
Q |
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| T |
23746676 |
cccttggacagaagggaaacccttagacaaa |
23746646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 23720473 - 23720545
Alignment:
| Q |
30 |
gagacgttagctagggacaattggcatggttagttgattagttagaggtaattagcttacataataaatagga |
102 |
Q |
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| T |
23720473 |
gagacgttagttagtgacatttagggtggttagttgatttgttagaggtagttagattatataataaatagga |
23720545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 705049 - 705100
Alignment:
| Q |
58 |
gttagttgattagttagaggtaattagcttacataataaataggacacaagt |
109 |
Q |
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| T |
705049 |
gttagttgattagttacagataattagcttacataataagtaggacataagt |
705100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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