View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_28 (Length: 247)
Name: NF18061_low_28
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_28 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3877 - 4107
Alignment:
| Q |
1 |
gtcatgttcatgcatggtttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
3877 |
gtcatgttcatgcatgatttctataattcctttttcaaggggtctctttttggtgtcattggtcattttctcatcagctgttgatacctcatatccaatg |
3976 |
T |
|
| Q |
101 |
gctttccatgctggattatcaccattttcatcaacctacaatatgtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3977 |
gctttccatgctggattatcaccattttcatcaacctacaatatgtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgt |
4076 |
T |
|
| Q |
201 |
gagtgtacaaaatggcactttgcagcaaggt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4077 |
gagtgtacaaaatggcactttgcagcaaggt |
4107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 1900 - 1799
Alignment:
| Q |
61 |
gatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaatatgtccgctttcttaagt |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| || |
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| T |
1900 |
gatcattttctcatcagctgttgatacttcatatccaatggctttccatgctggattatcaccattttcatcaacctacaaaatatcctctttcttatgt |
1801 |
T |
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| Q |
161 |
at |
162 |
Q |
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|| |
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|
| T |
1800 |
at |
1799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 31319793 - 31319563
Alignment:
| Q |
1 |
gtcatgttcatgcatggtttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatg |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
31319793 |
gtcatgttcatgcatgatttctataattcctttttcaaggggtctctttttggtgtcattggtcattttctcatcagctgttgatacctcatatccaatg |
31319694 |
T |
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| Q |
101 |
gctttccatgctggattatcaccattttcatcaacctacaatatgtccgctttcttaagtattgttatatttcaataagaagtttaattttaattattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319693 |
gctttccatgctggattatcaccattttcatcaacctacaatatgtccactttcttaagtattgttatatttcaataagaagtttaattttaattattgt |
31319594 |
T |
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| Q |
201 |
gagtgtacaaaatggcactttgcagcaaggt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31319593 |
gagtgtacaaaatggcactttgcagcaaggt |
31319563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 31332046 - 31331885
Alignment:
| Q |
1 |
gtcatgttcatgcatggtttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatg |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332046 |
gtcatgttcatgcatgatttctataattcctttttcaaggggtctctttttggtgtcattgatcattttctcatcagctgttgatacttcatatccaatg |
31331947 |
T |
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| Q |
101 |
gctttccatgctggattatcaccattttcatcaacctacaatatgtccgctttcttaagtat |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| |||| |
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| T |
31331946 |
gctttccatgctggattatcaccattttcatcaacctacaaaatatcctctttcttatgtat |
31331885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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