View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18061_low_3 (Length: 621)

Name: NF18061_low_3
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18061_low_3
NF18061_low_3
[»] chr3 (11 HSPs)
chr3 (316-499)||(37119069-37119252)
chr3 (7-163)||(37119374-37119530)
chr3 (193-288)||(37119249-37119344)
chr3 (21-158)||(37131101-37131238)
chr3 (21-152)||(37135158-37135289)
chr3 (21-134)||(37125064-37125177)
chr3 (208-257)||(37124937-37124986)
chr3 (507-606)||(4575800-4575899)
chr3 (239-298)||(37135385-37135444)
chr3 (507-606)||(3590952-3591051)
chr3 (507-606)||(9786740-9786839)
[»] chr5 (1 HSPs)
chr5 (21-164)||(1193920-1194063)
[»] chr7 (1 HSPs)
chr7 (21-164)||(31296978-31297121)
[»] chr4 (5 HSPs)
chr4 (507-606)||(13090675-13090774)
chr4 (513-606)||(44743558-44743651)
chr4 (507-606)||(22590786-22590885)
chr4 (514-606)||(4527746-4527838)
chr4 (507-606)||(14642102-14642201)
[»] chr6 (1 HSPs)
chr6 (507-606)||(26333513-26333611)
[»] chr1 (3 HSPs)
chr1 (21-152)||(20269090-20269221)
chr1 (507-606)||(6578282-6578381)
chr1 (239-298)||(20269317-20269376)
[»] chr2 (1 HSPs)
chr2 (507-606)||(7231602-7231701)
[»] scaffold0005 (1 HSPs)
scaffold0005 (507-606)||(175091-175190)
[»] chr8 (1 HSPs)
chr8 (552-605)||(29565396-29565449)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 316 - 499
Target Start/End: Complemental strand, 37119252 - 37119069
Alignment:
Q  316 atgtatggtgtgagcatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggatattttgtattttttcttcgtatg 415  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  37119252 atgtatggtgtgaccatgtttggcgtgactgtgtgtgagtcaaagtttgatgtttattttggtcatttaagacggattttttgcattttttcttcgtatg 37119153  T
Q  416 ttattagcaaagtaggtagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 499  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119152 ttattagcaaagtaggcagtacttgaaaaaaggcagtacgtgagtacaaaattgagaaagacagttctgaaatcttaattattg 37119069  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 37119530 - 37119374
Alignment:
Q  7 atgtcgaagaatattattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaact 106  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37119530 atgtccaaaaatattattcaggagtggaaagtgcagctgtaaaaggagatagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaact 37119431  T
Q  107 cacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119430 cacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggtgaagt 37119374  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 37119344 - 37119249
Alignment:
Q  193 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37119344 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatcatgtgaatgt 37119249  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 37131238 - 37131101
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||| ||| || |||||||| ||||||| | ||| ||||||||||||||||| ||||||||||||||  ||| || |||||||| ||| || |    
T  37131238 tattcaggagtagaaggtacagctatacaaggagaaaacaaggatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaa 37131139  T
Q  121 gaaagaaattctgtcatgcagatttggtgagtgttggt 158  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37131138 gaaagaaattctgtcatgcagaattggtgagtgttggt 37131101  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 37135158 - 37135289
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||| || || ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |    
T  37135158 tattcaggagtggaaggtacaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaa 37135257  T
Q  121 gaaagaaattctgtcatgcagatttggtgagt 152  Q
    ||||||||||| || |||||||||||||||||    
T  37135258 gaaagaaattcggttatgcagatttggtgagt 37135289  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 37125177 - 37125064
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    |||| |||||||||||||||||||||| ||||| ||||||| ||| |||| ||||| || |||||| |||||||| ||| || |||||||||||| || |    
T  37125177 tatttaggagtggaaagtgcagctatacaaggacatagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaa 37125078  T
Q  121 gaaagaaattctgt 134  Q
    ||||||||||||||    
T  37125077 gaaagaaattctgt 37125064  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 37124986 - 37124937
Alignment:
Q  208 cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg 257  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  37124986 cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataagg 37124937  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 4575800 - 4575899
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||||||||||||||||| |||||| ||||||||||| || ||||| |||||||    
T  4575800 aatttattctgaacatttcgattagtttcactatgtgcgcaagtccaaagaaacataacaagtgtctccaatgatgtcatttctttagatggatgtaacc 4575899  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 37135385 - 37135444
Alignment:
Q  239 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 298  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  37135385 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 37135444  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 3591051 - 3590952
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    ||||||||||| | ||||| |||| |||| ||||| ||| |||| ||||||||||||   |  || ||||| |||||||||||||| ||||| |||||||    
T  3591051 aatttattttggacatttcgattagtctcactatgtgcacaactccaaagaaacatagtcaaagcttccaacgatgtcatttcattagatggatgtaacc 3590952  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 9786740 - 9786839
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    ||||||||||| | ||||| |||| |||| || || ||| |||| ||||||||||||   |  |||||||| |||||||||||||| ||||| |||||||    
T  9786740 aatttattttggacatttcgattagtctcactgtgtgcacaactccaaagaaacatagtcaaagcctccaacgatgtcatttcattagatggatgtaacc 9786839  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 1193920 - 1194063
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| ||| || |||||||| ||| || |    
T  1193920 tattcaggagtggaaagtgcagctataaaaggagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgctaa 1194019  T
Q  121 gaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg 164  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  1194020 gaaagaaattctgtcatgcagaattggtgagtgttggtgaagtg 1194063  T

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Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 31297121 - 31296978
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||||||||||||| ||| || | |||||| ||| || |    
T  31297121 tattcaggagtggaaagtgcagctataaaagcagatagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgctaa 31297022  T
Q  121 gaaagaaattctgtcatgcagatttggtgagtgttggtgaagtg 164  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  31297021 gaaagaaattatgtcatgcagaattggtgagtgttggtgaagtg 31296978  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 13090774 - 13090675
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13090774 aatttattttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 13090675  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 513 - 606
Target Start/End: Complemental strand, 44743651 - 44743558
Alignment:
Q  513 ttttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44743651 ttttgaatatttctattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 44743558  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 22590885 - 22590786
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22590885 aatttattttgaatatttctattagtctcgctatgtgcacaactccaaagaaacataacaagtgcctccaaggatgtcatttcgtttgatgggtgcaacc 22590786  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 514 - 606
Target Start/End: Original strand, 4527746 - 4527838
Alignment:
Q  514 tttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    ||||||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  4527746 tttgaatgtttttattagtctcgctatgcgcacaactccaaagaaacataacaagtgcctctaaggatgtcatttcatttgatgggtgcaacc 4527838  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 14642201 - 14642102
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  14642201 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaacc 14642102  T

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Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 26333513 - 26333611
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||| ||||||||| |||||||||||||| |||  ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  26333513 aatttattttgaatgtttctattagtctcgctatgcgcacaaccccaaagaaacattacaagtgcctccaaggatgtca-ttcatttgatgggtgtaacc 26333611  T

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Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 20269090 - 20269221
Alignment:
Q  21 tattcaggagtggaaagtgcagctataaaaggagatagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctactta 120  Q
    ||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |    
T  20269090 tattcaggagtggaaggtgcaactataaaaggagataacaaggatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaa 20269189  T
Q  121 gaaagaaattctgtcatgcagatttggtgagt 152  Q
    ||||||||||| || |||||||||||||||||    
T  20269190 gaaagaaattcggttatgcagatttggtgagt 20269221  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 6578282 - 6578381
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||||||||| ||||||||| |||| |||| |||| |||| |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  6578282 aatttattttgaatgtttctattagtctcactatacgcacaactccaaagaaatataataagtgcctccaagaatgtcatttcatttgatgggtgtaacc 6578381  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 20269317 - 20269376
Alignment:
Q  239 ccctgtgtgtgagataagggacgacccttcttgttccatgatgtgaatgtcatcaagaat 298  Q
    |||||||| |||||||| | |||| |||||||||||||| |||||||||||||| |||||    
T  20269317 ccctgtgtatgagataaagaacgaaccttcttgttccatcatgtgaatgtcatctagaat 20269376  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 606
Target Start/End: Complemental strand, 7231701 - 7231602
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| |||||||||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  7231701 aatttattctgaacatttctattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaacc 7231602  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 606
Target Start/End: Original strand, 175091 - 175190
Alignment:
Q  507 aatttattttgaatatttctattaatctcgctatgcgcaaaacttcaaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaacc 606  Q
    |||||||| |||| ||||| |||| | || ||||| ||  || | ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||    
T  175091 aatttattctgaacatttcaattagtttcactatgtgcgcaagtccaaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaacc 175190  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 605
Target Start/End: Complemental strand, 29565449 - 29565396
Alignment:
Q  552 caaagaaacataacaagtgcctccaaggatgtcatttcatttgatgggtgtaac 605  Q
    ||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||    
T  29565449 caaaggaacataacaagtgcctccaatgatgtcatttctttagatggatgtaac 29565396  T

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