View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_30 (Length: 243)
Name: NF18061_low_30
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 6935871 - 6935650
Alignment:
| Q |
5 |
tacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctcttttt |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6935871 |
tacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctcttttt |
6935772 |
T |
|
| Q |
105 |
ggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttcacttttggtta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6935771 |
ggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcaataaaaatataaatgtttgcaacttcacttttggtta |
6935672 |
T |
|
| Q |
205 |
tgataattcaacagacacttac |
226 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
6935671 |
tgataattcaacagacacttac |
6935650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 6948539 - 6948392
Alignment:
| Q |
5 |
tacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctcttttt |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || || | |||||||||| |
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| T |
6948539 |
tacaaggacgctggtagggttgttggttcatgcaatggattggtctgcatacaagattcttctttcaccgctgagtatcatgaacactcattctcttttt |
6948440 |
T |
|
| Q |
105 |
ggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgca |
152 |
Q |
| |
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|||| ||||||||||||||||| ||| |||||||||||||||||| |
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| T |
6948439 |
ggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgca |
6948392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 6922009 - 6921797
Alignment:
| Q |
5 |
tacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctcttttt |
104 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||| || |||||| ||| || | |||||||| | |
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| T |
6922009 |
tacaaggatgctggtagggttgttggttcatgcaatggattggtctgcatgcaagattgttatttc---gcggagtatcacgaacactcgttctctttct |
6921913 |
T |
|
| Q |
105 |
ggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttcacttttggtta |
204 |
Q |
| |
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|||| ||||||||||||||||| ||| |||||||||||||||||| |||||| || | | |||||||||||||||||| |||||||| |
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| T |
6921912 |
ggaatcctgccacaaggacaaaatctgaaacattggtgtcttttcgcaactatcccaagcccagg------aaaaatgtttgcaacttcacatttggtta |
6921819 |
T |
|
| Q |
205 |
tgataattcaacagacacttac |
226 |
Q |
| |
|
||||| ||||| |||||||||| |
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| T |
6921818 |
tgatatttcaatagacacttac |
6921797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 6955153 - 6955028
Alignment:
| Q |
27 |
ttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctctttttggaacttcgccacaaggacaaa |
126 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||| | ||||||||||||||| |||||||||||||| |
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|
| T |
6955153 |
ttggttcatgtaatgggttggtctgcatgcaagattgttctttcactgctgaatatcaggagcactcgttctctttttggaaccctgccacaaggacaaa |
6955054 |
T |
|
| Q |
127 |
atccgaagcattggtgtcttttcgca |
152 |
Q |
| |
|
|| |||||||| |||||||||||| |
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|
| T |
6955053 |
gtctgaagcattattgtcttttcgca |
6955028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 6943437 - 6943386
Alignment:
| Q |
175 |
tataaatgtttgcaacttcacttttggttatgataattcaacagacacttac |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6943437 |
tataaatgtttgcaacttcacttttggttatgataattcaacaaacacttac |
6943386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 6954992 - 6954963
Alignment:
| Q |
197 |
tttggttatgataattcaacagacacttac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6954992 |
tttggttatgataattcaacagacacttac |
6954963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 6948372 - 6948324
Alignment:
| Q |
178 |
aaatgtttgcaacttcacttttggttatgataattcaacagacacttac |
226 |
Q |
| |
|
|||| ||||||| ||| | ||||||||||||||||||| |||||||||| |
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|
| T |
6948372 |
aaatatttgcaagttcgcctttggttatgataattcaatagacacttac |
6948324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 1986617 - 1986402
Alignment:
| Q |
5 |
tacaaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctcttttt |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | | || | |||||||||| |
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| T |
1986617 |
tacaaggacgctggtagggttgttggttcatgcaatggattggtctgtattcaagattgttctttcactgctgagtatcacaaacactcgttctcttttt |
1986518 |
T |
|
| Q |
105 |
ggaacttcgccacaaggacaaaatccgaagcattggtgtcttttcgcagtaatcccacgctcnnnnnnnntataaatgtttgcaacttcacttttggtta |
204 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||| |||||| || | | |||| ||||||| ||| | |||||||| |
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|
| T |
1986517 |
ggaatccttccacaaggacaaaatatgaagcattggtgtcttttcgcaactatcccaagcccaag------aaaaatatttgcaagttcgcgtttggtta |
1986424 |
T |
|
| Q |
205 |
tgataattcaacagacacttac |
226 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
1986423 |
tgataattcaacagacacttac |
1986402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 15572567 - 15572427
Alignment:
| Q |
7 |
caaggacgctggtaggattgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtatagcgagcatgctttctctttttgg |
106 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||||| | ||| |||||||||| | |||||||||| ||| | | |||| ||| ||| |
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|
| T |
15572567 |
caaggacggtggtggggttgttggttcatgcaatggattggtctgcttgcaaagttgttctttcgctgctgagtataccgactactccttctgtttctgg |
15572468 |
T |
|
| Q |
107 |
aacttcgccacaaggacaaaatccgaagcattggtgtcttt |
147 |
Q |
| |
|
||| ||||||||||| |||||| ||| |||| || ||||| |
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|
| T |
15572467 |
aaccccgccacaaggaaaaaatctgaaacattagtctcttt |
15572427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 22080468 - 22080505
Alignment:
| Q |
188 |
aacttcacttttggttatgataattcaacagacactta |
225 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
22080468 |
aacttcacgtttggttatgataattcaacagaaactta |
22080505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 18515491 - 18515463
Alignment:
| Q |
23 |
attgttggttcatgcaatggattggtctg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18515491 |
attgttggttcatgcaatggattggtctg |
18515463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 14514293 - 14514353
Alignment:
| Q |
23 |
attgttggttcatgcaatggattggtctgcatacaagattgttctttcacagctgagtata |
83 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | || | |||||||||||| ||| |||||| |
|
|
| T |
14514293 |
attgttggttcatgcaatggattgatctgcttgcatggttgttctttcactgctaagtata |
14514353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 5437279 - 5437247
Alignment:
| Q |
191 |
ttcacttttggttatgataattcaacagacact |
223 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
5437279 |
ttcacttttggttatgatgattcaacagacact |
5437247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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