View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18061_low_31 (Length: 241)
Name: NF18061_low_31
Description: NF18061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18061_low_31 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44476347 - 44476587
Alignment:
| Q |
1 |
ccctttaaaaatagagcaagggacacactatgaatctttgtatcatcggaaattgttgatgaaaaatcattaatcaccgtttgatcagaagatgcagtaa |
100 |
Q |
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| T |
44476347 |
ccctttaaaaatagagcaagggacacactatgaatctttgtatcatcggaaattgttgatgaaaaatcattaatcaccgtttgatcagaagatgcagtaa |
44476446 |
T |
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| Q |
101 |
ctaaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttgtaattcttcgccttgagaaatgggaagaacattgctagttttatt |
200 |
Q |
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| T |
44476447 |
ctaaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttgtaattcttcgccttgagaaatgggaagaacattgctagttttatt |
44476546 |
T |
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| Q |
201 |
agcagtttgatgagtgtttgataagaattcgaaattttgtt |
241 |
Q |
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| T |
44476547 |
agcagtttgatgagtgtttgataagaattcgaaattttgtt |
44476587 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 37166625 - 37166677
Alignment:
| Q |
103 |
aaaccatctaaacaagtttgttggtttgttaaaacagcactaagcaaggtttg |
155 |
Q |
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| T |
37166625 |
aaaccatctaaacatgtttgatgattagttaaaacagcactaagcaatgtttg |
37166677 |
T |
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